Svar012465.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- stc
- Assembly
- GCA_949127995.1
- Location
- OX421844.1:24336486-24361351[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 2.3e+04 -4.1 1.6 15 19 500 504 499 504 0.81 2 13 0.056 6.8e+02 0.9 0.2 4 10 533 539 532 540 0.95 3 13 5.6e-07 0.0069 16.8 15.1 1 19 545 562 545 562 0.93 4 13 5.2e-06 0.064 13.7 10.5 3 19 600 616 592 616 0.86 5 13 1.2 1.5e+04 -3.4 0.2 8 11 621 624 620 624 0.83 6 13 1.8e-05 0.22 12.0 17.4 1 19 656 674 650 674 0.90 7 13 0.0097 1.2e+02 3.3 15.6 4 18 722 736 715 737 0.86 8 13 0.041 5e+02 1.3 12.2 1 11 777 787 777 799 0.91 9 13 4.6e-10 5.6e-06 26.7 15.5 1 18 804 821 804 822 0.97 10 13 1.6 2e+04 -3.8 0.9 6 10 851 855 851 856 0.81 11 13 2 2.4e+04 -5.9 8.2 10 18 869 878 861 879 0.75 12 13 1.2e-07 0.0015 18.9 8.7 1 16 915 930 915 937 0.92 13 13 2e-06 0.025 15.0 13.6 1 19 947 966 947 966 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCGGACCCGGAACCTAAGCAAACCCAGTCGTCAATGTCGCAGCTGTGGCAGGGATTTGGTGCGATAGGAGCAAGAAACGAAAATACGGTTGACTCTACTTCAGTTCAAGCCGACGTCAGTAGCGCTACATCCAACACCAGAGTGCCAGCAGTTCACGTAAATAATAACTACGTAAATTTTAACCAGTTTATTATGCAGCATAATCTTCATGGTGGAGGAGGAGGCAACGGAAGTGGTGAATATGCTAATGCTAACTTTAATATAACTAACGGAGAAAGCGAATCATCTTTACCACGGAACTCAACTGATAGCGAAAtcaataacattaaaatgagcgacagtttttttgattttaatcatGCTTCTTCCGTAAATAAGGCTTCTTCCGGAGTCAACAATTTTCCGCAAACAAatTTCTTCAATCAAGATTTTAATTGCGTTCAAAGCATCAACATCGTTCCCACCTCCTCTAATTTATACGGAGATGGACTTAATAATTGCAACAACTCAACGAGTCTCAATTATTATGACAATATTTTCACACCTTTCAGCAACAGTGACACTGACACCACTTACTTTGCTAATCCTTTTGCCACTGGTTTTGAGTTTAGCACTTCAAGTTTGCAAGCAACAGCACCCGAGTTTGTGCCACGATTTAACCATCTTTCACTGAACGAAAATCACTCTGCTAATGGCTTGAATTCAGCGACTCCAATAACAGAACAGCTCAAAAGAgattttgataaacaaaataaaaaaacagcatCAGTCACTTATTCTATTTCTGGCGAAAGCGTAGATAATTCAGCGACAGAACTTggtaaacaaactaaaattaatttgcaggAACAAAAAACATATGAGATCAGAAAGGAAAGAAACAATGCAGTCAAAAATGaagcgaaaaataattttgaactaaaaaacatttcatttggtGACAGTGGCCAATTAAAACACACCGAAACAgcttcatcatcatcttcatctCCTTCGACTTCATCAACTAGTGCTGTAACACGTTCTACTGGCGCAACAAGTAAGACTTCATTGCGGTTGTCTGAAGCACGTCCGGCCTCAACGAATGGTTTTTCTAATAATACTATCAATGCGCCCAATCGCAAAATTCTTGTTCGCCGTGCTGAACGAGAACGCGAGCGTGATGGACGTCGTTATCAAAATGGACGGCGATCGcGCACTTCTTGGAGAGGTCAAGTAGAAAAGTACAGTAACGATACTGTTACAGAGAGTCCATTTCCTTCACCAGAAAAGaaAACCTCTCCAAAGAAAACATATccagaaaacgaaaaactctCACAACGCGAAAAACTTGTGCGGGACATAGAGACACGTCGACTAGAATGTCTTGTCTGTGTAGAACCAATTAAAGCTCATCATTCCGTTTGGTCCTGCCATAATTGTTACCACATTCTGCATTTGCAGTGCATAATTAAATGGGCGTCATCTTCTAAATCAGATGACGGTTGGCGTTGTCCCGCCTGCCAGAACGTGGTAAAAGAAGTGCCAAGAGACTACTACTGCTTTTGTGGAAAAGTCAAGAACCCGACGTACAATCGTCAGGATATTGCACACTCATGCGGCGAAGTATGCGGACGCGTCGAAGGCTGCTCGCATGCATGTACTCTGCTCTGCCATCCCGGACCTTGTCCGCCATGTCAAGCAAATGTTAAGCGCGAATGTGGTTGCGgcaaaacaaccaaaataatGCAATGTTGCCTAAAAGAAGCCATTGAATGCGATTCAATATGTGGAAAACTGCTGAACTGCGAGCTACACACATGCAGCTCTACTTGTCATGATGGCAAGTGTTCGTTCTGCTCAGAAAAGGTTGATCAGACATGTCACTGCGCAAAGCAGCATCGTCAAGTGGCATGCACGCGTGACTCACACGATAAGCACGCCTACTCTTGCGGAAAAGCTTGTGGAAAAGACTTGTCGTGCAACAATCACAAATGCAAGGATTGCTGTCATTTAGGTGAATGTCGTCCCTGTAAGTTAAGTCCGAGTGTGGTCACTGCTTGTCCCTGCGGCAAAATGCCACTAATTCAAGGTCAGCGTATTTCTTGCTTGGATCTAATTCCGGTTTGCGAAGGTGTGTGCGGCAAGACTCTACGTTGCGGAAAAGCTGCTCATCCTCACCATTGCACCAGCAAATGTCATCTTAGTAACTGTCCGCCGTGCAACAAACAGACCGCGGTAAAGTGTCGCTGCGGTCACATGGATCAAATGATTAAGTGCCGCCAACTGTCAACGCGCGCCGACGATGCGCGCTGTAAGAAACGTTGTGTTAAGAAACGCTCTTGCGGTAAACACAAGTGCAATCAGGAGTGTTGCATTGATATTGATCACATCTGCCCACTGCCCTGTAACTACACGCTGTCTTGTGGTAAACACAAGTGTGATCAGCCCTGCCACCGTGGCAACTGTCCACCATGTTACCGATCTTCGTTTGAGGAGCTTTTCTGCGAATGCGGTGCCGAAGTTATTTATCCGCCAGTAGCATGCGGCACCAAGCGTCCCATCTGCAAGCGTCCTTGCTCCCGCTCCCATCCGTGCGATCATTCGCCGCAACACAACTGCCACTCGGCGGCCACTTGCCCGCCTTGTATGATGTTTACCACCAAGTGGTGTTTTGGACAACACGAGCAACGCAAAACCATTCCATGCTCGCAAGAGAGCTTCAGCTGTGGCCTCGCTTGCAACAAAGAGCTGGTTTGCGGGCGTCACAAATGCATTAAGTCATGTCACGAAGGCGTATGCCAGATAACGGCAGAAATCTGCAAACAGAACTGTACCAAATTGCGTTCTTCATGCGGTCACAAGTGTATGGCACCCTGCCATGATGGCGTATGTCCGGAGACACCGTGTAAAGAAATGGTTGAAGTTCAGTGCGAGTGTGGAAACCGTAAACAAATGCGTTCGTGTCATGACTTGGCGCGCGAGTATAGTCGCATTGCAACTGCACAGTTGGCTTCGTCTATGGCGGAAATGCAGCGGGGAAACTACATGGAACTATGCGAAATTTTAGCTCCAGTCAAAACCAATAAAACTAATAAGACGTAA
- Protein Sequence
- MSADPEPKQTQSSMSQLWQGFGAIGARNENTVDSTSVQADVSSATSNTRVPAVHVNNNYVNFNQFIMQHNLHGGGGGNGSGEYANANFNITNGESESSLPRNSTDSEINNIKMSDSFFDFNHASSVNKASSGVNNFPQTNFFNQDFNCVQSINIVPTSSNLYGDGLNNCNNSTSLNYYDNIFTPFSNSDTDTTYFANPFATGFEFSTSSLQATAPEFVPRFNHLSLNENHSANGLNSATPITEQLKRDFDKQNKKTASVTYSISGESVDNSATELGKQTKINLQEQKTYEIRKERNNAVKNEAKNNFELKNISFGDSGQLKHTETASSSSSSPSTSSTSAVTRSTGATSKTSLRLSEARPASTNGFSNNTINAPNRKILVRRAERERERDGRRYQNGRRSRTSWRGQVEKYSNDTVTESPFPSPEKKTSPKKTYPENEKLSQREKLVRDIETRRLECLVCVEPIKAHHSVWSCHNCYHILHLQCIIKWASSSKSDDGWRCPACQNVVKEVPRDYYCFCGKVKNPTYNRQDIAHSCGEVCGRVEGCSHACTLLCHPGPCPPCQANVKRECGCGKTTKIMQCCLKEAIECDSICGKLLNCELHTCSSTCHDGKCSFCSEKVDQTCHCAKQHRQVACTRDSHDKHAYSCGKACGKDLSCNNHKCKDCCHLGECRPCKLSPSVVTACPCGKMPLIQGQRISCLDLIPVCEGVCGKTLRCGKAAHPHHCTSKCHLSNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVACGTKRPICKRPCSRSHPCDHSPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKELVCGRHKCIKSCHEGVCQITAEICKQNCTKLRSSCGHKCMAPCHDGVCPETPCKEMVEVQCECGNRKQMRSCHDLAREYSRIATAQLASSMAEMQRGNYMELCEILAPVKTNKTNKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -