Svar008658.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- grn
- Assembly
- GCA_949127995.1
- Location
- OX421843.1:29760030-29787972[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6 4.4e+03 -2.2 1.0 6 19 234 247 233 249 0.82 2 2 2.3e-19 6.2e-16 58.1 4.7 1 35 465 498 465 499 0.98
Sequence Information
- Coding Sequence
- ATGGCAACCCACTtgccacaacaacaagcgCAAGCATTGCAATTTCTACGAATCGTAACTAGTTCCACAGAACTCACCTTCACCTCTGCAGTGCTTAAGCAAGCTCACACATTCTCGGAAGGCAcacagcagcaccagcagcagcaagagcCAACGTGGTTGCAGCCGCAGACAAACAGTCGCGCAACTCTCATCGACACCGGCTCCTTGTCAATTTGGCTGAAGCCCTCTGAAATAATCACCTCGGATCGCTACCCGAATCGCCAATCCTGTTTCTTATCCAgatCTTCCCGTATGCCATCGTCACATACATCACCGCAAGTGTGTCGGCCTCACTTTCATGCGCCCCTGAGTTCATGGCTCACCAGCGAACATAAATCATTTGCGCCTGCCAGCCCATGGGGTAGTCCGTTTGCATGCCCCCAAGATCCGCAGGTTGACCATAAGGTCGGACAGGTTGGGCAAAGTCATCAAACGACAGCGGGCCAGCATTCGTTTCCGTTCCCACCGACACCGCCAAAGGATTCCACACCCGATTCAGTACAAACCGGTCCCTCAGAATATCagGCCGTTGTGAACGCCTTCATGCATCAGGCGCAAGCGACTGGCTCTACCTCAATATCGGACGCAAGTTGTGCGCTGGACATCAAACCCACAATACAAAATGGCGGCAGTAGCGGTTCACATAACGGCAGTCAGCAGACGACGACGCCGAAGCAGCGCGAAggtactaacaacaacaacaacaacaataatagctcaacaaacaacaacaatagcagcaatAATAATGCATCAAACAATGCCAGCAACAATCACAATGCGCACACGCATGCGTCCGCTGCCGCTGCGGCGGCACAAAATGCGGCGAGTCAAAATGCCAACAATAATGGCAATACAAATTCCGCACTCAATGGCTCCGGACTCTTTGACGGAACAGCGCAAGCGCACTATGCGAGTAGTTTAGGCAATTTGGGTAGCGGAGGTGGAGGTGTCATTGGCGCCGGCGTCTCGGGCGGCAATAATgccggtggcggcggtggttaTGACGGCTCGTATGCTTCATATGCGGCGCATCATCATGCttcagcggcggcggcacacCATCAGGCGGCCGCTGTTGCTGCGGCGGGCATGTTTCAAAGTTCCTCAgccgcggcggcggcggcagctgTGCGACACAGCATGTCGGGTGGCGTCGGCCATCACAGCAGTCATGGGCATGGCCACGGCCATCATTTCGGCCATCACGGGCATCATGGCCTCGGTGCTGGTGGCGGTGGTAGTGGCATAGGTGCGTCGAATGGACAGGGTGGCGGCAGTAACGCCGGCGGTAGCGGTGATGTCAAGCCGGCGCGAACGAAACCAAGGACCAGTGCAGaAGGCCGTGAATGCGTCAACTGCGGTGCGACATCGACGCCTCTTTGGCGACGCGATGGCACCGGTCATTATTTGTGCAATGCCTGTGGATTATACTACAAAATGAATGGTCAGAATCGACCACTTATTAAGCCAAAGCGAAGACTGCATCGTTGCGGCGGACGACCGCGACCGACCGACATTGACGCGCAGCATCCGCATCCTGTTGCAAATAAACGAACGATGCACAGGTAA
- Protein Sequence
- MATHLPQQQAQALQFLRIVTSSTELTFTSAVLKQAHTFSEGTQQHQQQQEPTWLQPQTNSRATLIDTGSLSIWLKPSEIITSDRYPNRQSCFLSRSSRMPSSHTSPQVCRPHFHAPLSSWLTSEHKSFAPASPWGSPFACPQDPQVDHKVGQVGQSHQTTAGQHSFPFPPTPPKDSTPDSVQTGPSEYQAVVNAFMHQAQATGSTSISDASCALDIKPTIQNGGSSGSHNGSQQTTTPKQREGTNNNNNNNNSSTNNNNSSNNNASNNASNNHNAHTHASAAAAAAQNAASQNANNNGNTNSALNGSGLFDGTAQAHYASSLGNLGSGGGGVIGAGVSGGNNAGGGGGYDGSYASYAAHHHASAAAAHHQAAAVAAAGMFQSSSAAAAAAAVRHSMSGGVGHHSSHGHGHGHHFGHHGHHGLGAGGGGSGIGASNGQGGGSNAGGSGDVKPARTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHRCGGRPRPTDIDAQHPHPVANKRTMHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -