Svar012128.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- ZFX
- Assembly
- GCA_949127995.1
- Location
- OX421844.1:20360333-20379693[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.08 13.9 0.6 3 23 554 574 552 575 0.93 2 13 0.0031 0.22 12.5 1.0 1 23 592 615 592 615 0.96 3 13 0.031 2.2 9.3 2.9 1 23 620 644 620 644 0.93 4 13 0.0026 0.18 12.7 2.6 2 23 733 755 732 755 0.92 5 13 0.0033 0.23 12.4 0.2 1 22 760 781 760 781 0.95 6 13 0.37 26 5.9 0.2 2 23 809 830 808 830 0.95 7 13 3 2.1e+02 3.1 3.5 2 23 842 862 841 862 0.96 8 13 0.00017 0.012 16.4 5.1 1 23 868 891 868 891 0.97 9 13 9.1e-06 0.00065 20.4 1.1 1 23 921 943 921 943 0.97 10 13 0.45 32 5.7 1.6 1 23 950 974 950 974 0.92 11 13 0.051 3.6 8.7 3.6 1 23 979 1003 979 1003 0.98 12 13 0.017 1.2 10.1 2.3 1 23 1010 1032 1010 1032 0.98 13 13 0.013 0.95 10.5 5.2 1 21 1038 1058 1038 1063 0.93
Sequence Information
- Coding Sequence
- ATGGATGCCGATTTAGATGACACACATCTCTGCATCAAGTGCAGTTCCGCGATCGTAGGTCTCGCTAACTACATTCAACATCGAAAGAGCAACTGCGGCGTCACTAATGCAACGAGTTCGGAACAAAAACTATCCATAAACTCTCAAACTAATAATGAAACCCAGCACGAGATATCTGCCACCTTGATCTCCACCAATACCAATACAAACATAGATCACACATACGACTCCTTTTCCTTTCACGAACCAGAACAACCTTTGGCATACGTTGGTAAATCTGAGCACGATGGTAAAACCTCAAAGTCCCTAAACGATGCCTACGACTTGCCATACGAACTGGGTGCggatgtatttttttcatcgCTGCAGTTACAGAGCGTTCAGTCCATGGGAACAGCACACTCGACCAGTGGCAAAACTGGAAgtacgcaacaacaacaagtccAATTGCAGCGACAAAAGTCGAACCAGGATCACGCTGAACATGTGGAAGCGGGCTGGATTGAGGCACATGCCGGTGGTTCGAGTGGACAGCATAAGAACTCCGAGACCCTAATGACTGCTTTCATTGGCGATATGGGCGAATCAAAGAAACCTTATGAATCGGTTTTTAAATCATTGCCATTTGTACACGAATCACCCGATGTCAGCGAAGATGAAGACGAAGATGAGGAGGAAGCCGAAATGGAAATGGATGATGAAGACGAAGACTATGATCCGATTGCAGCCGGCCATGCAACAGGTGGCAAATGGAAGCTGCCGCTAATACGTCACTCGCCACCAGTTGTACCTGCGACGCACACTGGCGGCAAATGGAAGCCAGAAAACCGACCGAATCTGCGTGTTACTCACACACAGTTAACACGTCTTTCGCCGAACTGGGATATAGAGACTGGCACTGATGAGGTGGAACCAACAGAAGCCGACACAGAACAACATCCACCTGCAGAGCACACTAAGGGTAAATGGATACCTGGCACCAAACTACAACGCCTAGAGTACAAAGAGGAGGTCGAATTGGCCAAATCGTCTAACCAAGATTTTTGGTGCAATATTTGTTgcagaaaactgaaaaacaaattcatttacgAGAACCACTTAAAGACGAGCTATCATCTCAAGCGTTCCGAGCCGGAGCAACAACTGGAGAAAGCAGAACTCGACGAACTGCAGCATAGCGAAATAACCAAGAGCTTTGAAATCAAGGCAAAAGAATTGCCGAAGCCTGTTTCCAGAAAACGCAAACGTCGTGCAAAACTCATCAAGTGCGACCTATGCAAGCATACGATGTCGCGTCACTTAATCGGCAAACATCTCATATCACACTTTCACTATCGACACATGCAAAAAAGCTCCGATAAATCGCTGCCAATGATACTTGAGCACATTCATTCCATTGTGCTTCAATCCCCATATCAGTGTCGCCCATGCAGTTTCTATGCCAATACCGAGGAGGCTTTCTTGCGTCATTGGAACTCACCCGAACATTTGGATAGATCGGAACGAGGGCCCGGTAAATTCTGGTGCAGTTACTGTCACTTTGAGTGCGAGGGCAACAATCGAATGGGCCGACATTTGTTGAGCGCCGAACACAAGGAAGTTATTTTGGCCATAAACCGCTCAGTTCCGATTTGTATAATCAAAAAGTCAAATATCGATTGCAATGCGTGTGGTCAGTCGTTTCGTTATAATGCGGAGCTACGTCAACACGGCCAGCTCCATCATCCGGGCACTATTAGCACTGGCACAGCTTCAGACATATATCAGAGTCGTTTCAAGTGCGATCAATGTTTGGCGAACTTTTCTTCAAAGATTGCATTGCAGCGTCATGAGAAAAATAAGCACTgcattttgaaatacttttgttcCATCTGTAATTTGGAGTTCAATACGCCGTGTAAAGCGCGTCGCCATCGCAAGACATTGGAGCATCGTTCACAGGCTGCCAGCGCAGCAACTAAATTTCCAACGAAGAAACAAAAGGTCCTAACTGTGGAAGCCGATTCAAGTGCCAGAGATTGTACGCAATACAATTTTGTtGCCTCATCTGAATTGGAATCGATAATGCATGAAGTTCCacaaaagagaacaaaattttccaacagtTCCATTTCGTCGGGAGCTCTAACTATCAAAGAGTCAAATTCGCCAACtagaaaattgtcaaaaacaaaaatcgcatTGGTCAATCCGATCAAGTGTAAGGATTGCGATTGTATCTTCGAAACTCGTAACGATCTTCGAACGCATCGCGACTTGAAGCATCCACTCTTCAGCCATGTTTGTATGAGCTGTGGCGAAAGTTTTGCATCGGCTCAAAGCTTGGGACGACATACCAGAACCTGCCAACCGAAGCCTTCCGAAACTACTGCCTTACGATTAAATGCAGCAGTTCAGCACAAATACGATGGGGTAAAGTCTTGGAAGTGCGAAGATTGCAATTTTAGCGCTCGCTACGAATCGGATATCTTGTATCATCGACTTATTCACACTTATGGCATACTAACCAAACAGCAGTTGGTCAAGTGTCCATTgtgcacaaacacatacaacaaatacTCGTTGCGTTGTCATTTGCGTCAGCACACCAACgagaaaatattcgaatgtCGATTTTGTAATGTGAAATTTTCGCGTCGTCACAATCTGAAGAAGCACATCAGCAAACTTCACTCGGAGAAGGATGAGCAACCATCGACGTCAGCTGCTGCAAGTAAAAAGGACGACGGCAATAAACGTAAAATCGCACAGAAAAGGGATTATCAGTGTGACACTTGTGGAAAAGTGTATTCGAAAAAATATGATCTAAAGGTACACAGTGCAAAACATGGAACTGCCGTcacaaattttcattgtttctTTGAGGGATGTCGCTATTTTTCACCGAATAAGAGTATGCTCAATGTCCATTTGGCGTCGCATTCGCAGGAGACCTTCAAGTGCgaccaaaaaaattgcaaatacgTAGGCAAGAGCgctttacatttaaaaagacaCTCGCGAACACACGCCGCTCCTTCGAAGCTGTACTCGTGCGACAAGTGCAACTTCCAGGCCCGCTCAAAGGCGCACATTGTACGCCACTTGCGTTCTCACACCGGCGAGAAGCCGTTCCAGTGCCGCTACTGCGACTTCCAGTGCAGCAGTTTCAGTAATCTGCGCAAGCACGTCCTCAAGACGAACAAACATCCCGGAAAGTTCATTTACGAGTGCGAAATGTGCCCGCAACAGGAGGAGGCCAACGAAGATGGCGGCGCATCAACAAATGCCGCAATATTCAAAACTAACGTGTATCAAGAATTTCAACAGCATCGCGCCGATGTACACTAG
- Protein Sequence
- MDADLDDTHLCIKCSSAIVGLANYIQHRKSNCGVTNATSSEQKLSINSQTNNETQHEISATLISTNTNTNIDHTYDSFSFHEPEQPLAYVGKSEHDGKTSKSLNDAYDLPYELGADVFFSSLQLQSVQSMGTAHSTSGKTGSTQQQQVQLQRQKSNQDHAEHVEAGWIEAHAGGSSGQHKNSETLMTAFIGDMGESKKPYESVFKSLPFVHESPDVSEDEDEDEEEAEMEMDDEDEDYDPIAAGHATGGKWKLPLIRHSPPVVPATHTGGKWKPENRPNLRVTHTQLTRLSPNWDIETGTDEVEPTEADTEQHPPAEHTKGKWIPGTKLQRLEYKEEVELAKSSNQDFWCNICCRKLKNKFIYENHLKTSYHLKRSEPEQQLEKAELDELQHSEITKSFEIKAKELPKPVSRKRKRRAKLIKCDLCKHTMSRHLIGKHLISHFHYRHMQKSSDKSLPMILEHIHSIVLQSPYQCRPCSFYANTEEAFLRHWNSPEHLDRSERGPGKFWCSYCHFECEGNNRMGRHLLSAEHKEVILAINRSVPICIIKKSNIDCNACGQSFRYNAELRQHGQLHHPGTISTGTASDIYQSRFKCDQCLANFSSKIALQRHEKNKHCILKYFCSICNLEFNTPCKARRHRKTLEHRSQAASAATKFPTKKQKVLTVEADSSARDCTQYNFVASSELESIMHEVPQKRTKFSNSSISSGALTIKESNSPTRKLSKTKIALVNPIKCKDCDCIFETRNDLRTHRDLKHPLFSHVCMSCGESFASAQSLGRHTRTCQPKPSETTALRLNAAVQHKYDGVKSWKCEDCNFSARYESDILYHRLIHTYGILTKQQLVKCPLCTNTYNKYSLRCHLRQHTNEKIFECRFCNVKFSRRHNLKKHISKLHSEKDEQPSTSAAASKKDDGNKRKIAQKRDYQCDTCGKVYSKKYDLKVHSAKHGTAVTNFHCFFEGCRYFSPNKSMLNVHLASHSQETFKCDQKNCKYVGKSALHLKRHSRTHAAPSKLYSCDKCNFQARSKAHIVRHLRSHTGEKPFQCRYCDFQCSSFSNLRKHVLKTNKHPGKFIYECEMCPQQEEANEDGGASTNAAIFKTNVYQEFQQHRADVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -