Basic Information

Insect: Suillia variegata
Gene Symbol: PRDM1
Assembly: GCA_949127995.1
Location: OX421845.1:41630608-41636018[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.5e-05 0.0032 18.3 2.5 1 23 1017 1039 1017 1039 0.99

2 5 1.4e-05 0.00096 19.9 5.1 1 23 1045 1067 1045 1067 0.98

3 5 2.8e-06 0.0002 22.0 4.3 1 23 1073 1095 1073 1095 0.98

4 5 0.00095 0.067 14.1 2.4 1 23 1101 1123 1101 1123 0.97

5 5 0.00016 0.011 16.5 0.1 1 22 1129 1150 1129 1150 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.5e-05	0.0032	18.3	2.5	1	23	1017	1039	1017	1039	0.99
2	5	1.4e-05	0.00096	19.9	5.1	1	23	1045	1067	1045	1067	0.98
3	5	2.8e-06	0.0002	22.0	4.3	1	23	1073	1095	1073	1095	0.98
4	5	0.00095	0.067	14.1	2.4	1	23	1101	1123	1101	1123	0.97
5	5	0.00016	0.011	16.5	0.1	1	22	1129	1150	1129	1150	0.96

Sequence Information

Coding Sequence: ATGAATATacatcaccaacaacaacaacaacaacagcaacaatcaaCACACAACACCTTCAagagtaacagcaacaacaaccacaccaCAACGTCATCTTCATCActaacaacacaacaacaacaccagccaCACCAGCACGCAGTAGCAACAGCGccaacgataacaacaacaacaacaacaacaataacagcaaacaCACAACAAGCGCACCCAAGAGCCATGAGCCCGCCGCCATTAACACCGCAAACGGCGCGCAGCCCATCACCGGATGGGACGCGCGACTACGATGTGACACGCATGCGCGAGGAAGATTTTGAACGGCTGGCCGTCTACATTGTTCCCGATGTGCAGTGCGAGCGTGGCTTGGCGAATCGGGCGGACAAGACGCTGCCACGCAGTTTGACGCTAAAACCGTCAATGGTTTTCTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCACAGGGGTCATACCGCGCGGCACACGCTTTGGCCCATTCGAAGGCGTTCCAACTCCAAATTATCCCAACGATAAAAACACGGCGAGGTATTTCTGGCGGGTGCAGGGAACACGCCACATAACCTACGGGAATATTAAGATATTCAAGGATGATGACTTCTATTATCTGGATGGCTCGGAGCGCTCACAATCGAACTGGATGCGCTACGTTGCGTCCGCTTACAGTCTCGCCGTTATGAATCTGGTTGCGTGCCAGCACcaggaaaatatttacttttatacgACGCGCGACATCATGCCTAACGAGGAGCTGATGGTGTGGTACTGTAAGGATTTTGCGCGACGGCTCGGCTACGATGTCGATCCGGAGCGCACAATCTTTGGCGCCTGCAAGCAAACAACTGGTTCGAGCGATGGCGATGAGGAAGAGGAGGAAGACTTGGACGACGAGGACGAACAAGCGTCGAACACTGCCAATGCCGCGTGCCACAAGAAACCCTCCACCTCGCCATATTGCATGCCAGCGCCGGAGATACCGCCCGAAGTAGCATACAATCACATTACATATGTGATGGGCCTGCACATACCACCGTCAATAGCGGCATCGACGACAACGCCGTCGACTAACAAACGCTTATTACATGTTGCTCCGGCGCCGACACAACAGCAGCCTGCGACGACGCAACACTTGCATCATCCACCGCAACACACAACGCATCCGCATATACGTCATCCGCAGTCAAGTGTGCTCGTGCAACTGAAGCAAGAACCCGTTTCCGCATCCGCCTCAGTAATTGTACGCGATCGTTCGCCGGCTGCCACTGCTGCATcggccagcagcagcagcgattgTGGCGCAAAAGATGGTGTGAAGGATGCGGCAAGTTCACCGATCTCAGCGCACAAGGACGCTGTCGCCTATGAGCATCAGCTGACGCCGAACGATGGTAGCGTTCGTAGTGTACGCTCCGATGAGGGCTATCACAGTAACGAGTACCACGAGGATGGGCTAACGCCACCCGAAGACTCCAGCGACAGCGAAAGCGAACACAACTATGTGCTCGACTGTTCGAAGAAAGCCATTGCACCCAAGGAGACGGTTATTACACAATCGCTGAAAACCGTTGCCACTGCGGCAGCGACAAGTCCCACTGCTGTCGTTGTCGCTGCCAAtgccgctgttgctgccgcCGTCACTTCGGAGTGcgacaataaaaatgaataccGCAAGTTCATTTGCAAGATGCCGCTCAAGTATGAGTTCAAGAATAGCAAGTGCAGCGGCCTGATTAAGACTGAGGCGTGTTCGCACGCCAACctccaccaccaccatcacCAAACACACACGACAAATGAACTGCCCGCCGCAACAGCGACTTCGAGCCAAGACGATATGATGCGAagtacgacgacgacgacttccATCGGTGCATGCACGTCGTCAACGCGCGAGGATGATTCCGAAAGCATGGAAGTAGATTGCAAACCCGTCTATGGTTCTAACAGTAGCACTGCCAGCGGGCCAACGTCACAGCTCGCGTCGAGTACGGTTATTGTGCATGAGCACGAAGGCGTTAATGTCGGCGTCGACAGCGCGTGTGAAAGAAATGTTCAAGGTACTCGCAAACCCTACTACGAGGCCGAGTCTAcatcaccaccaccaccgacTGCCGCAGCCGCTGCCATGGCTTACCTGCGATTCCCGCCACCGTCGTCGAGCATTCTGGAAACGATATTAACCGGTCAACATCGCTCAACGAATGCGAACGCTGCAACGCCGCCGCCCACTTCACCAACGGAAATGGCGTATTCGTACAAAAAATCTCAGCGTTACGGCAATGCGGTCAGTCCCGATTCCAGCTCTAATCTGGCACAAGCGCAAGAACAAGCCgcggcagtagcagcagccgcagcgcAAGCGCACGATGCCGCTAATGAGTTGTTAGTGGCAACTTCATCGTCGCGTGCGAGTCTAAAGGACGCTGACTATtcaccaccaccagcagcagttTCGGCACTGCCGCcacatcatcatcaccatcatcatcatgtCATATTCTCGCCATCGGCGACAGCAACACACGCATACGGTGGTAGTGGTAGTATCGGTGATGGCCATCAGACGCCGCCCTATTCGAATTACTCCTCGTATTCGTCGAATGGGAGCGCTGCCAATGGAAACAcatcagcggcagcagcagcggccgcCGCCGCACATCAACATGCGCACATTCACCACGCCTTACAACATGCGGCGCCCTGCTCGTCCACCTCCACCTTTCATTCGCCACCGCACAGCTCACATTCGCCCTTTGCCGATCGCCATTCGACCGCTTCGTCTAGCGGCTCCACGCCTAATCTGCATCTGTTGCAAAGCAGTACGCAACTGCTTAACCATCCGCTAATGCAGCCGCTAACACCGCTCCAACGTATGTCGCCGCTGCGAATTTCGCCACCGAGCAGTCTCAGTCCCGATGGCAATTCGTGTCCGCGCAGTGGCAGTCCGTTAAGTCCCAACTCGTTGGGCTCGCGTGGCTATCGCTCGCTGCCGTATCCCCTAAAGAAAAAGGACGGCAAGATGCACTACGAGTGcaatgtttgttgtaaaacttttgGCCAGCTGAGCAATCTAAAGGTACATCTACGCACTCATTCCGGCGAGCGCCCGTTCAAGTGCAACGTCTGCACGAAGAGTTTTACGCAGCTGGCGCACCTGCAGAAGCATCATCTCGTGCACACCGGTGAAAAGCCGCACCAGTGTGACATATGCAAGAAACGCTTCTCATCAACGTCCAACCTGAAGACGCATTTGCGTCTGCACAGCGGGCAGAAGCCGTACGCCTGCGATTTGTGTCCACAAAAGTTTACTCAGTTTGTACATCTGAAGCTGCACAAGCGTCTGCATACCAACGATCGGCCGTATGTGTGTCAGGGTTGCGACAAGAAGTACATCAGCGCTTCGGGACTGCGCACCCATTGGAAGACGACCAGTTGCAAACCGAACAATCTCGAAGAAGAGTTGGCAATGGCCGCAGCTGCCACATCGGAGTGTCTAGACAAGGATCTACCCGAGCCAGACTCACGGGAAGCATTCGAGCAGCTACAACATCACATGCAACATCCGCATTTGCGACACATGAGCGGAACTGTGGCCGGACATCATTCGCCGCCGCGACTAATTGCGTTGCAGTCGCACAGTCCGCAGCACCATCaccaacaccagcagcagcaacagcaaccgcAGCACACAACGCACAGTCatctgcagcaacagcagcagcaacacgcCGCGCTGTTGCAGCAGCATttgccaccaccgccaccaacagcagcagcgacaatgTTGCTGACGACTGCCAAtcaactgcaacaacagcatcaccaacagcagcaacaacagaatcaccatcatcaacaacagcagcagcagcagcagcagcaacaacaacaacacttattaatgcaacaacaatcgcACAAAGCCCTAAAGCAGGAAATGCACGGCGTTGGTGATGAACCGCCTTACATGAGCGTTTCACATGCACACGCGGCTGCTGCGGCGGCACATGCGGCAGCAGCTGCCGCCGCAGCTCATGCCGCGCATGCTGCGGCAGCGCATCAACACGCACAAACGCAGGAGAACCGGCCATCGGTGATTGAGTCATCGCAACCGATGATCATTGAGTGCACCTAA
Protein Sequence: MNIHHQQQQQQQQQSTHNTFKSNSNNNHTTTSSSSLTTQQQHQPHQHAVATAPTITTTTTTTITANTQQAHPRAMSPPPLTPQTARSPSPDGTRDYDVTRMREEDFERLAVYIVPDVQCERGLANRADKTLPRSLTLKPSMVFSTPNVKTEGVWSTGVIPRGTRFGPFEGVPTPNYPNDKNTARYFWRVQGTRHITYGNIKIFKDDDFYYLDGSERSQSNWMRYVASAYSLAVMNLVACQHQENIYFYTTRDIMPNEELMVWYCKDFARRLGYDVDPERTIFGACKQTTGSSDGDEEEEEDLDDEDEQASNTANAACHKKPSTSPYCMPAPEIPPEVAYNHITYVMGLHIPPSIAASTTTPSTNKRLLHVAPAPTQQQPATTQHLHHPPQHTTHPHIRHPQSSVLVQLKQEPVSASASVIVRDRSPAATAASASSSSDCGAKDGVKDAASSPISAHKDAVAYEHQLTPNDGSVRSVRSDEGYHSNEYHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVITQSLKTVATAAATSPTAVVVAANAAVAAAVTSECDNKNEYRKFICKMPLKYEFKNSKCSGLIKTEACSHANLHHHHHQTHTTNELPAATATSSQDDMMRSTTTTTSIGACTSSTREDDSESMEVDCKPVYGSNSSTASGPTSQLASSTVIVHEHEGVNVGVDSACERNVQGTRKPYYEAESTSPPPPTAAAAAMAYLRFPPPSSSILETILTGQHRSTNANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLAQAQEQAAAVAAAAAQAHDAANELLVATSSSRASLKDADYSPPPAAVSALPPHHHHHHHHVIFSPSATATHAYGGSGSIGDGHQTPPYSNYSSYSSNGSAANGNTSAAAAAAAAAHQHAHIHHALQHAAPCSSTSTFHSPPHSSHSPFADRHSTASSSGSTPNLHLLQSSTQLLNHPLMQPLTPLQRMSPLRISPPSSLSPDGNSCPRSGSPLSPNSLGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDLPEPDSREAFEQLQHHMQHPHLRHMSGTVAGHHSPPRLIALQSHSPQHHHQHQQQQQQPQHTTHSHLQQQQQQHAALLQQHLPPPPPTAAATMLLTTANQLQQQHHQQQQQQNHHHQQQQQQQQQQQQQHLLMQQQSHKALKQEMHGVGDEPPYMSVSHAHAAAAAAHAAAAAAAAHAAHAAAAHQHAQTQENRPSVIESSQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -