Svar006428.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421843.1:3736386-3744791[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.021 1.5 9.9 0.0 1 23 182 205 182 205 0.96 2 13 0.042 3 8.9 3.6 2 23 254 276 250 276 0.88 3 13 0.00048 0.034 15.0 0.1 1 23 417 440 417 440 0.93 4 13 0.73 52 5.0 2.1 2 23 491 513 490 513 0.94 5 13 0.081 5.8 8.0 0.1 1 23 576 599 576 599 0.90 6 13 5.5e-06 0.00039 21.1 1.0 2 23 650 672 649 672 0.97 7 13 0.00021 0.015 16.1 0.7 1 23 779 802 779 802 0.95 8 13 0.088 6.3 7.9 0.1 1 23 1214 1237 1214 1237 0.93 9 13 0.096 6.8 7.8 0.8 2 23 1287 1309 1286 1309 0.95 10 13 0.036 2.6 9.1 1.0 1 23 1406 1429 1406 1429 0.91 11 13 0.28 20 6.3 3.7 1 21 1481 1501 1481 1502 0.95 12 13 0.00072 0.051 14.5 0.1 2 23 1596 1618 1595 1618 0.95 13 13 0.076 5.4 8.1 1.2 2 23 1668 1690 1667 1690 0.96
Sequence Information
- Coding Sequence
- ATGGACTCGGTTTGGAATATGTTCTCCAACGATTTCGTCGCAGAGGAGACAGACGCAAATGAAATTCTCGCTAACGATATTATACAGGAGTATCGCGGATTAGGAGACCAAGActacgaagaagaagaagtgggTGAGCCACTCCTCATCGCTGACGCTGTAAAGGAACAAACGGCAGTGACGGTGGAGGAGGAGGAGAAAGATGATCCGCAAGTTAAACAAGAGCCCGCCGACTTCGTGGAAGATGTTGAAGATGAAAATGGCATAATCGCAGATTATCTTACGCCGGAACAGGTAAAGGCCGAGCTGATAACCGCACCACTTAATAACGACGACGAAGGCGATGATGACGAcaccatttttaatttcggcGCAATGCTGGTCGAGCCGCAGGTTCAAATCGGTGTCGGGGAACGTACAACGACTGCGTCATCGGCGTCCATAAAACCAGCGCGTGGTTATCTAGCGGAGCATATTAGTACCACACCGCCGCCACAAGAGCACGAGGACGAAGTGGAAATCAACTACGAAAGCgctgttgtttatatttgccCTGCATGTGGCGCTGAGTTCGATGCACAGAATACTTGGAAGCGGCACATGAATTTGACACACGATTTTAATACAAGACGAGGCCTAAATTTTGTTCAGCTGGATAAACTCTATCACGAATGCCAGGAGTGCCACAAACGCATCGCCATGCACGCCATGGAAAATCTGCTCAAACACAAATTTACCCATCTGCCCTATCGCTGCACCAAGTGTCGCATTTGTTTGCGCCAGTATAAATACCGTCAAGATCTAATGGTTCATCTGCGCATGACGCACTACGAGGATATGGCTGCAATGGCGAAAACATTGCGCGCCgaagaaacacaaaaagcaTTGCATTTGCCAGTGCGTGCGCCACCTGCGTGCGCCAATCCTCTACCGCGTCTAGcgattaaagaaattaaagagAATGCCATCGAtatattcgaaaataatttcggTGGTGTTATTGATGGAGATGGCGATGGCGTTATCGAAGTTAAAAACGAACTAATTGAACCAGACGATGATGATATAGAAAATCCCTTGGAAACCGATATTGATGCTTTGGCAGAGCAGACGAGCAGCTCTTTTGTACTGCCCTCATTTCTGGAGGATGCACTAAGTCGCAGCTCTTCGCACAAGTCGGCGGTGGCTGCTGCCGGCAGTGGTGGCGGTGCGTTCACCGATGAAGAAATTTGCGAAAAGTACGTTCAGTATGTTTGTCCTCAGTGCGGCACTGAATACGGAACTCAGTCACAATGGCGCCAGCACATTGAATTCGTGCACGATTTTGGCTCGCGTCAGGGACTCAATTTTCAGGAGGTTAACATGAATCAGAACGCCCAGTGCTTAGAGTGCAAAAAGatATTGCAAGTAAACGTTATTCGCAACTTACAAATGCACAAATTTACACATTTGCCGCACAAATCATGGCTGCGGTGCAAACTTTGCTTTCGCTCCTTTGTCGGTcacaaagaaataatttcgcatttaacaaaacaacattgTGTGGGCAACAGCGCCAGTGGCGGTGGTGCATACGATGCAGACGAAAGTCAAGACACGCGCGGCACCGGCGACATGgaagacgatgacgacgacgatacAAATCAGCTGCTTACCGAACAATCGGAACAATCTTCGTCCAAAGGACAAAGTGATGATAGTGATCCGTACGAGCCACATATCGACTACTTGTGCCCGCAATGCGGTCGCGTTTATCTGGATCGCAAAATGTGGCGCAAGCACATTGTGCAAGCGCATCAACTGACAGATCTGGCGGTACTTAACTTCAAGGTGATTAACGATCGGCAGGTGATATGTCTTGAATGCGACAAAATCATAACTAACGCTTACGGCGTCCAAAATGCGCAACAGCATCGGATCACGCACATGCCATATAAAGCATATATACGCTGTCGTCTCTGCGGTAAATCCTACACCGATCGTAAAGGCCTCACTAAACATTTGCGAACAGTGCATTCGATCGGCGAAGATAACGTTGCAACCTCGCTGCTATCTTCGGCAACAATTGCTGCATCAATGTCGTTTTCTTCATCCTCGTCATCATCGCTGCGTCCAATGCCACCGCTGCAGCCAAAGCCACATCAGCAGTTACACCAGCGTCGACCACAACAGCGCGAAATTGTAAAACATGCCAATGTCACTTATGAGATTCAGTATCTTGACGAAGGCGACGATGCCATAATGTTCATGGACGATAATTCTAATGCGATGCCGGATCATCACTCGTCGTCGTCATTTAGTAGCTCTTTTGACTCGGCACAGTTGCGGCGCGATCATAAATGTCCTGATTGTGGTTCCCTTTTTTCTACGACACAGGCGTTGCAGCGTCACATGAGCGAGGAGCATGAATTTCTTGatttcaacaatttgaaaCCGCTTTCGCAAGAGCCAAAGCTTTTTCGCTTTAATGCTACGGACACCAAGCATGGtttcaacattaaaattatgtcCGACAATTTAACGTTAGAATGGAATATTTTGCGCGATAAAGCTACTCTTACAAATTTCGCCCTTACTCGTATCATGTTGGGTGAATCGGTCAAGAAAcccatattcaaaattatgagCACAAAAATTACTGTTGGAAGTGATTTTTTACGTCTGCAGGTCACCGATGGCCGCAAAGTCGATTACGTTTGGTGCTCCGTTCCACAGTCGCAGCTCTTCGAACTAGAGCCGCTTACGATCGTACAGCTGGATCGATATGAGATGATTAATTTGGAGGGTCATAAATCCTGCCGTATTTTGGCATTGACAGTCCTTAATCGTGGATCGGATATCTGCTACCAGGAGAGTCTGCTCCCAAAGCGTGCAAATCTAACGGGCGAtacaattaaagaattttttaacgaTGGCAAGTTGATATTTGAACCGATTGTGCAAATTATCGATTTGACAACTGTCGTCCTCGCAAGTGACAACAAGAAACGTATGCGTCTACAAATTTTTGACggaaagcaaaaatgtttcgCGTATTTGTCGACTCAACTACATCAACATCTACGAGGAGATCTCAGCTTGTATTTTAGAAGTATTGTACGTTTGGATCTATACAAGGCGAATCGTATGATTTCAGGTGGATGCTCCTCAATTACTATATTTGAACTGACGCTTTTAAACAATGGCAAAACTGTTTGCTTCGAATGGGATGTGAAGCCTGAAAAGCCACAACGATCTCGTGGTTTTATTAAGCGTTTAATTGCCGGcaaagaaaaaaccgaaaagaaaCCAGTACTTCAAATCGTGAATGTTCTAATGAACACCGCCACAGATTCAAGCAAATCCTCGCTTAGCTTGTTACTCGCCGATGAGAGCCGGAACTTTTTCGTGCAGTTTACACCGCTTAATCGAAGACCAAATCACTCAGAGGACGAAGATCGGTCGCAATCGAACGATGGCGATTTACTCGTACCGTCCTCTTCTGCGTCAACGCCGGGTGGTATTAATGATGACGATGAACACAACATAAACTACGTGTCCTCCTCAACTGGTACTACCGCCAACAGCATCAACCTTCCACCGACAGTTACACCATCGTCCTCCACCTCCACATACGCCAGTGTTGAACGGTACTTTTGCTATCTGTGCCCAGCTTGCGGCACCGAGTACAAAGCACAAATGGACTGGCGTCGCCACATCAACGAGACGCATAATTTCGATAAGCGGCACTATCTCAATTTTCGACCAATCGACAAGTTTCGCTATCAGTGCACCACCTGCAGCGACATTGTGTCCAATTCGAAGCTGAAGGGTCTGCAGGATCACAAATTCAGACATTTGCCATATAAGCTGTACATTAAATGTTTGATTTGTGGCAACAAATACAATCATAAGCCGAATATGTTGGGACATTTGCGCGCACGCCACAACATTAAAATCAGTGAGTCGCAAATGCGCAATGCTGGCGGCAATAGCATCGGCGCCCATGGCGACTACTGGAATGAAAGAAATGAATATGTGCCCGCGCCGAACCGACCATTTACACCACCATCGCGTCCCGCCTCGATATCTTCAGCGCTGGCGGCAGCAGCCGCAGCTAAAGCGACAACAGGTGGTGATACGCCAATGACTTCCTTGTATGGCAAACCACCCGGCCTCAAAACGGTCGAAGACTGCATCTCCTTTCACAATGCTGTCGATCACGATACGATTCTTTATTTCTGTCCGCAGTGCAATGAAAACTTTGATACACACGTCTTTTGGCGCAAACACATCGTCGAGGAGCATAATCTCAACTCACGCCAGGGTCTAAATTTCCGACAAATTGACGAGCATCACTATCTGTGCCTGCAGTGCTATAAGCGCGTTACGGTAACGCACACCAAAGGTGCCATTGGTCAGCTGCAGTCGCACAAGTTTCGACATTTGCCATTTAAATCGTTCAAGTGTACGCACTGCCTCAGCGAATTTGTGCGCAAACAAATGTTCTTCAAGCACttaaataaactgaataaTCGCTGTACAACTGCACCAACTGCTGAGGCGCTTGCAGCGGATCAGGCTGCTGCTGCGAATCAAAGTGCCCCGATCGTTGCATCGACAAACGAAAGACCGGCGACGACAACGGAAACGCAATTGGATGCCGACGACGATGAATTAGTTGAAATTATCGCGGCGCCATCTAAAGTCAGCGCTACTCCTTCGCTAACTATTTCGAAAATACCGgccggcagcggcagcagtttTACACTTACCGACGCCACTGCAGCGGCCCACTTTATACTTAGTTGCCCTCAATGTGGCCAGCAGTTTGAAGATTGGCGCACGTGGCGGGAACACATTAACGTCGTTCATCTGCTCGGCAGTCGTCCGgtattgaattttaagaaaatctcAGCCAACCTTCATCAGTGTCTGCAGTGTCGCGAGCACGTCAACGGCGTTAAGCTACGCGATTtgcaaatacacaaatttaagCATTTGCCACACGGCGCTCACATACAGTGTCGCTATTGTCAGGCTGCGTACTATCATGTCGCGAATATGACAAATCATTTGAGACAAAAGCATCCGCAGTTAGAGGAGGCAGCAGCGGCCGcggcgacagcagcagcagatgtCGAAATACAGCCGACAGAGCAACTGGACGATGATGTGCACGACGTCGATGGTGAAGGTGAGGATGAGGGCGATGTTGATGACGACAATGGTGATGTGGATGAAAATACCGAAATGGTCGAACTCGTCGAGGAGCCGGAGGATGACGATCAGTTTTTGCTAGGATAA
- Protein Sequence
- MDSVWNMFSNDFVAEETDANEILANDIIQEYRGLGDQDYEEEEVGEPLLIADAVKEQTAVTVEEEEKDDPQVKQEPADFVEDVEDENGIIADYLTPEQVKAELITAPLNNDDEGDDDDTIFNFGAMLVEPQVQIGVGERTTTASSASIKPARGYLAEHISTTPPPQEHEDEVEINYESAVVYICPACGAEFDAQNTWKRHMNLTHDFNTRRGLNFVQLDKLYHECQECHKRIAMHAMENLLKHKFTHLPYRCTKCRICLRQYKYRQDLMVHLRMTHYEDMAAMAKTLRAEETQKALHLPVRAPPACANPLPRLAIKEIKENAIDIFENNFGGVIDGDGDGVIEVKNELIEPDDDDIENPLETDIDALAEQTSSSFVLPSFLEDALSRSSSHKSAVAAAGSGGGAFTDEEICEKYVQYVCPQCGTEYGTQSQWRQHIEFVHDFGSRQGLNFQEVNMNQNAQCLECKKILQVNVIRNLQMHKFTHLPHKSWLRCKLCFRSFVGHKEIISHLTKQHCVGNSASGGGAYDADESQDTRGTGDMEDDDDDDTNQLLTEQSEQSSSKGQSDDSDPYEPHIDYLCPQCGRVYLDRKMWRKHIVQAHQLTDLAVLNFKVINDRQVICLECDKIITNAYGVQNAQQHRITHMPYKAYIRCRLCGKSYTDRKGLTKHLRTVHSIGEDNVATSLLSSATIAASMSFSSSSSSSLRPMPPLQPKPHQQLHQRRPQQREIVKHANVTYEIQYLDEGDDAIMFMDDNSNAMPDHHSSSSFSSSFDSAQLRRDHKCPDCGSLFSTTQALQRHMSEEHEFLDFNNLKPLSQEPKLFRFNATDTKHGFNIKIMSDNLTLEWNILRDKATLTNFALTRIMLGESVKKPIFKIMSTKITVGSDFLRLQVTDGRKVDYVWCSVPQSQLFELEPLTIVQLDRYEMINLEGHKSCRILALTVLNRGSDICYQESLLPKRANLTGDTIKEFFNDGKLIFEPIVQIIDLTTVVLASDNKKRMRLQIFDGKQKCFAYLSTQLHQHLRGDLSLYFRSIVRLDLYKANRMISGGCSSITIFELTLLNNGKTVCFEWDVKPEKPQRSRGFIKRLIAGKEKTEKKPVLQIVNVLMNTATDSSKSSLSLLLADESRNFFVQFTPLNRRPNHSEDEDRSQSNDGDLLVPSSSASTPGGINDDDEHNINYVSSSTGTTANSINLPPTVTPSSSTSTYASVERYFCYLCPACGTEYKAQMDWRRHINETHNFDKRHYLNFRPIDKFRYQCTTCSDIVSNSKLKGLQDHKFRHLPYKLYIKCLICGNKYNHKPNMLGHLRARHNIKISESQMRNAGGNSIGAHGDYWNERNEYVPAPNRPFTPPSRPASISSALAAAAAAKATTGGDTPMTSLYGKPPGLKTVEDCISFHNAVDHDTILYFCPQCNENFDTHVFWRKHIVEEHNLNSRQGLNFRQIDEHHYLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPFKSFKCTHCLSEFVRKQMFFKHLNKLNNRCTTAPTAEALAADQAAAANQSAPIVASTNERPATTTETQLDADDDELVEIIAAPSKVSATPSLTISKIPAGSGSSFTLTDATAAAHFILSCPQCGQQFEDWRTWREHINVVHLLGSRPVLNFKKISANLHQCLQCREHVNGVKLRDLQIHKFKHLPHGAHIQCRYCQAAYYHVANMTNHLRQKHPQLEEAAAAAATAAADVEIQPTEQLDDDVHDVDGEGEDEGDVDDDNGDVDENTEMVELVEEPEDDDQFLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -