Svar020260.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- RREB1
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:20701859-20708354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.82 10.7 0.6 1 21 269 289 269 291 0.96 2 12 0.00047 0.034 15.0 0.2 1 23 301 323 301 323 0.98 3 12 3.3e-05 0.0024 18.7 7.5 1 23 329 351 329 351 0.98 4 12 0.31 22 6.2 5.3 2 23 602 623 602 623 0.91 5 12 0.013 0.89 10.6 0.1 1 23 856 878 856 878 0.97 6 12 2.7e-05 0.002 18.9 1.2 1 23 888 910 888 910 0.99 7 12 0.0012 0.083 13.8 2.0 1 23 916 939 916 939 0.97 8 12 0.0042 0.3 12.1 2.0 1 23 1290 1313 1290 1313 0.95 9 12 0.00012 0.0087 16.9 0.3 2 23 1634 1655 1633 1655 0.97 10 12 0.21 15 6.7 6.3 1 23 1661 1684 1661 1684 0.97 11 12 0.012 0.85 10.6 0.5 3 23 1892 1912 1890 1912 0.96 12 12 0.0019 0.13 13.2 4.8 1 23 1918 1940 1918 1940 0.99
Sequence Information
- Coding Sequence
- atgcTTGCTACACAAGTCGCCGCCACGACAAACCAGTCGCTCGAGACCGGTAGCCGtgcaaccacgcccattaaAATGGAACGTCGCGATTCAACAACATCCGAGTCGTCGCTGGAGCACTTGGATCTAGGGCGTACACCAAAGAAACTCAACACACACTCGTCGGCCACATCGACGCCACATCTGGTCAACGGCGGCAAATCGATCGCCACAATTGCGACAGCTACAGACTTGTCCGTCAATGCGGCTGCTGTCGCTGCCGCCTCCACCAACACACACGAAGTATTGCTGGTCGATGGCCAGAAGAAGCTGCGACTGCAACAGCGTCTTGGTCATGATTCAGACGAGACCAACGATTACGATGAAGATGATTCGGCCGATGAGAAGCTGAGTTCGACTCGTTCACAACGTCACCACAAACGTCGCAGTAGCGGCCGACTGGACAAACGTGCCTGCGTTCAGCTAGAGTACAATGCCGATAATCCGAATTCGTTGCGAAAGAAATTTCGCTTTAATCGCAGCACTTCGGAAGCCGGAATTACGACAACGAGTACCAACAACGAATCGGGCTTTGTTGATGCCAGCTGCAACAGTCAGTATCTGAACGCGTCAGCGGGTTCGGCACATGCCAGTGCAACGAGCacttgcagcaacaacatcagcatcGCACAACAGCCACAAGCATCGCCGCACACCTCAGCCTCGACGTCGCACAGTTCGTCGTCGGCCTCTTCGTCACCGCACGGTGGCGCTGGAGCGGCTTCAAGTCCTGAATCGGGCATCGGTGAGCGCGAGGACATGAAGTATGTCTGCCCCATATGCGAAGTGGTTTCGGCGTCGCCGCACGAATTCACCAATCACATACGATGCCACAATTATGCCTCAGGCGATACAGAAAATTTTACCTGCCGCATTTGCTCGAAGGTGCTGTCGTCTGCCTCGTCGCTGGATCGTCATGTGCTTGTGCACACCGGCGAGCGTCCCTTCAATTGCAAATACTGTCACCTCACCTTCACCACCAATGGCAACATGCACCGCCACATGCGCACACACAAGCAGCATCAGCacaatcatcatcatcgccgCAACTCGAATGGAaccaagaataacaacaacaataataataacactgGCGCGCTTGGTACGACGCAGACAACACCTGCCACTGGCTCCACTGCTTCGGCTGCTTCAGCGACGGCGGCAGCTTCGATAATGTCTGTCGTCGCTAACGCGCAATTAAccaacggcaacagcagcgAAGGTGTTAAAACAGCAtcaacggcaacagcaacagcggcagcagcaacaacaataacaacaacaacattgtctGCCACGTCGTTGGCAGCAGCGGCGACAGGTGCTAATGGCAAACGTTTAAATGGTAGCGGCGTAGAAAGTTACGAAAGTGATGGCGGTTGCTCAACTGATTCATCAAGTGCCATCAGCCAAAGCTCAAATCATAATCATaataacaaccacaacaacaataataacaacaacatcaaatccaacaacaacaataataaagtgagcaacaatttcaaacgCAAAAACAGCGATCATCTCGAAATGGATGATGTTGCGTTGCTGAAGCGACGCGTGAAGACcacaattaacaacaacaaccacaacaataacaacaacaacagcaccaacGCAGATTTGAATGCATCATTGACGGCGGCAGCCGATGAGCTCGTCTTCGTCGCACCTGCCTGTCCTGTCTGCAATGCCTCGGACTTTGATGGTATGCTATCACTGGGGGCACACATGGATGCCGAACATTCGGATATACCCGCCAAATGTCGCAACTGTGACGTTGTGTTTCGCACGCATCGCCAACTCAATAATCATCCGTGTACGCACAAGCCAGAGGCCACTGCCGGTTTCAAAGATCTCTCCTTTGTCGATTTTTCTAGCGAAAAATTTCCGCTAATTGCCAAGTCCTTGTGCGAGCAAACTTTGCGTACGGCCATTACCAGTCAGCGATTTGAATGTCCGAAGTGTTGTCGCGCTTTTCCCTGCGCCAGCGCCTGTGCATTGCACACCCAAGAATGCGAAGGCGATTCGCTGAACCGATTGAAGTTGGCTGCGGCAGCGTCAGAGGACTACTCTGCGTATGTGTCACGTCGCACCAAACAGCGCAGCGTAAGCGAAAGTTCGGCCGGTGTTGAAGAGGCCGATGAAGATGCTCACAGTCGCAATGAGTTCTTTCGCCACCTGCATCTGAGGAACAAGCCGTACCGCTCACAGAGCATGAATTCGCTTTCGTCTGCGCACCATTCAAACGACGATCAATTGGATGGCATTAAGTACGAGATCGATAGCGAGCGACTGTCCATGTCGCACAATATGTTGTCGCAGGAAGCTCATGATTCGAAGGACTTTGCCGACATTCAAACCATTCTGAATATGACATCCTCTTCGTCGACCTCCAATTTTCTGAAGAATTTTGAGCAGTCGGTAAATACGCCGTCGAGCAACTACAGTTTGGATAAGGACGAAGAAGAGGCTCAAGACGCTTTCACATCGGAGTTTCGTAAAATGAAGCTACGTGGAGAATTTCCGTGCAAACTGTGCACCGCAGTGTTTCCGAACTTGCGCGCTCTAAAGGGACACAATCGCATACACTTAAGCGCTGTTGGCCCAGCTGGGCCTTTTCGCTGCAACATGTGTCCGTATTCGATTTGCGATAAAGCTGCACTAGTGCGTCATATGCGTACACACAACGGCGATCGTCCGTATGAGTGTGCCGTCTGCAATTACGCCTTTACGACCAAAGCGAATTGTGAGCGCCACTTGCGCAATCGTCACGCTAAGACAACACGCGACGAGGTGAAGCGTGCCATCATTTATCATCCGTCTGAAGACTCCTCGTGCGATGATCCCAACAAAAAGTTGCATATGTTTTCGTCGCCAGACTTTGATGACGATTGCGATCTGCCATACCAGCATCAACATCCTAAAGACCGTTCTACGCCGGTGTCGCACCTTAAAGAAATGCTCACAGGTGACAGTCCCTCATCAAAGCCCATGAAAATTCAGGTGAAGAGCCTGGAACAATTGTTGGACAAATCGCCAGTTCCATCCAACTACAATGAGGCATACGATAGCCATCATGGTCAGAACACATGTGCTCCTGACACTGCACCAATCGACTTGAGCATGGATGTTTTGGATCTGAGCAAGAAGCCTACCAGCAAACCAATCCAAAAGGAGGTTATTCCAACACGTCCACCAACGCCACCCGCTGTTCTGATTGCTGAATCAGAACCCGCTGCACGTTCTGCAGAAGATCCCAAATTTGACTTGTCTACACTGGAAAAGAATCATCAACTGTTcttagcacaacaacaacaactgatgaACGATGCTATGCCGAAAATAGTTGATCCCACGCAGTATCTTCAACAACTGTACCGCAACCTCGTTTTTCCACCGATCAATCCATTCTTCTTGCAAAACTCTTTCCTACCCAATAATCTGAGCGATCTTCAAAAATTTGCACCACTCATGAATCAGATGTTTGGTGGCAACGTCGCTGCTACAGGCGCACCAATGCTAACTCTCGATGCCAACAAAACGCATTCGAACAACTCTGCTGCCGCAATGTTGCCGCAGGTGAGTCCACTAATGTCGGACAAGTCGAGCACTCCGACGCATTCATCAGCCTCTCCCGCATCCATGAGTCAAATGTTGCCCAAGTCATTGACATCGCCAACACCATCGAATGCCTCACTCAATATTCCCCGACATCCGCATATGCCATCTACTGTGCTCCCTGGTGGCCCTGTTAAGATGGTCATCAAGAACGGCGTACTCATGCCTAAGCAGAAACAGCGCCGTTATCGCACAGAACGTCCATTCGCCTGCGAACATTGTTCTgcacgttttactcttcgttcGAACATGGAACGGCATGTTAAGCAGCAGCACCCTCAATTCTATGCGCAGCGTCAACGCAGTGGACATCACATAATGCGCGGACGAGGTGCCAGCAGCGCTGCAGCTATGAACAATATCACACATCTGCAGGCTGCTTTTGCACAAGCGCACAATAATGGTGGAGGCAGCATGGGTTCTTCGCCAATATCCGAGCAGGTAAAATACGCCATACTAGCACAACAGTTAAAGGCACGCAAGGATACCGATCTGCTGCAACAGGCGTTAGCGCACGGTTCCAGCAGTGTTGCACCAAATCACGTGATGCTTAGTGGTTCTGGAGCAAATGGACTGCCATCGCTGCCCAATGGACAGCAGTACAACTTCAACCATTTAAATAGTCCAAATATCAACGGTTCGGCAATGGAAGATGATGAGCCAAAGTTGGTCATTGATGaggacgatgacgacgatgacatAGAGACAATTCCCGATGAGAATGATACTGAACCGGACAATGACGAAAGTTATACAGAAGAACCATTGCCAATGCCACAAGAAGAGGTTAAACCACAACAAACAACCGAACCAAATGAAGCCGCCAAAAAAGTTGCCGAAACCATATTGGAACAGGCAATTAAAGCTGGTCAAAACTCCAACACAATTGCAAAGCCCGATGCACCAGCTCCAGCCGCCAACACCATGAAATCGATGATTGCTCAAGCCGAGTCAGTCGGCAAGTTCCTTAAAGAGGTCGCTAGCTCGCCATTCAAAGATGAATCTCAAGACTTGGTCCCCGTCTCTAAACTAGTGGACAATGCCACCAGCAATGCCGTCTCATTCAACAACTACTTTCGACCGAGTGACGTAGCTAATCACATGGAACAGAGTGACGAAGAAGGCTTGGTCGCCTCGGGCAGCGCCAGCGAGAGTAACAATTCCGGCACAGAAGACATTGCCACATCGGCTGAGCCGAAAAAGAAGTCCGCCTATAGTTTGGCACCGAACCGTGTCTCATGTCCCTACTGCCAACGCATGTTTCCGTGGTCTAGCTCGCTGCGTCGCCACATACTTACGCACACCGGTCAGAAGCCCTTCAAGTGCTCCCACTGTCCGCTACTTTTCACGACCAAAAGCAACTGTGACCGCCATCTACTGCGTAAGCACGGTAACGTCGAGTCAGCTGTTTCGGTATATGTACCGACAGAAGATGTCAACGAACCGATACCTGTGCCCAAATCCGTCGAAGAAATCGAACAACAGCAGCGTCAACGCGAAGAAGAGGAGCGACTACGCAAAGCCGAAGAAGCACAACAATTGGAGCGCGAACGTCGCGAGAAGGAACAGCaacgccaacaacagcaacaaaaacaacaacaacagcagcaagaacaagaacaacatcagcaactaCTTAAACAGCTCGCCGCTGCCCAGCTTAGCCAACTTAATGCAGCAGTTACTGCCGCTACTGGTGCTGCCGGTAGCAGTCCAAAAAACGATGCCGGCCAAATTGCGTCCTCGGAACTGCCATTTAAATGCCATCTGTGCGAGAGCTCCTTCGGTGAACGTTTCCAATGCTTGGATCACATTAAAGTTCAGCACGCGCAAGAATTTGCATTGCTGCTGGCTAAAGGCGCCATCGACACCGATGCCGACGTCAATCAGATGATGCACGCTGCCGAAGACGAAGACCGTCGTAGTGCTGCCAACGACGAAAGCAGCACAGCCGGCCGCAACGGCAGCAGTGGTGGCAAATATCCCGACTATAGCAATCGCAAAGTGATTTGCGCCTTTTGTGTGCGTCGTTTTTGGTCTACCGAGGATCTGCGTCGTCACATGCGCACCCATTCAGGTGAACGTCCCTTTCAGTGTGAGATTTGCTTGCGCAAGTTTACGCTGAAGCACAGCATGCTGCGTCACATGAAGAAACACAACGGGCGCCATCACAGTGGCGGCGCCACCGGTGATTTGTCGACTGCCGGCAATAGCGGTTCAGATTTCTCCGATGACGAGCAGACACCGACGCCGACACCAACGGCCACAGCCACGCCTACACCGGCTACCTCTATGATGATGATGGCGGCAGCAAATCATGCCGCACTCAGCATGCGAGCGCCCAAATTCCAAGAGCTGCTAAACAAAGCGAACGAGTGGCGCGCCAGTCGCCTGACATCGTCACTAGGCGCCGATCAAAAGGAGAATATCGCCGCCGAAGAGCACAACCAGCATCAAAGCGATCTTATTGGAAATCTGTTGGGCATCAGCGATCAGGGCATACTGAACAAGTTGCTCTCGTCAGCCGACGAGGCGGCCAAGCTGTTGGGCGTCGATAAGTAG
- Protein Sequence
- MLATQVAATTNQSLETGSRATTPIKMERRDSTTSESSLEHLDLGRTPKKLNTHSSATSTPHLVNGGKSIATIATATDLSVNAAAVAAASTNTHEVLLVDGQKKLRLQQRLGHDSDETNDYDEDDSADEKLSSTRSQRHHKRRSSGRLDKRACVQLEYNADNPNSLRKKFRFNRSTSEAGITTTSTNNESGFVDASCNSQYLNASAGSAHASATSTCSNNISIAQQPQASPHTSASTSHSSSSASSSPHGGAGAASSPESGIGEREDMKYVCPICEVVSASPHEFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTKNNNNNNNNTGALGTTQTTPATGSTASAASATAAASIMSVVANAQLTNGNSSEGVKTASTATATAAAATTITTTTLSATSLAAAATGANGKRLNGSGVESYESDGGCSTDSSSAISQSSNHNHNNNHNNNNNNNIKSNNNNNKVSNNFKRKNSDHLEMDDVALLKRRVKTTINNNNHNNNNNNSTNADLNASLTAAADELVFVAPACPVCNASDFDGMLSLGAHMDAEHSDIPAKCRNCDVVFRTHRQLNNHPCTHKPEATAGFKDLSFVDFSSEKFPLIAKSLCEQTLRTAITSQRFECPKCCRAFPCASACALHTQECEGDSLNRLKLAAAASEDYSAYVSRRTKQRSVSESSAGVEEADEDAHSRNEFFRHLHLRNKPYRSQSMNSLSSAHHSNDDQLDGIKYEIDSERLSMSHNMLSQEAHDSKDFADIQTILNMTSSSSTSNFLKNFEQSVNTPSSNYSLDKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAVGPAGPFRCNMCPYSICDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSCDDPNKKLHMFSSPDFDDDCDLPYQHQHPKDRSTPVSHLKEMLTGDSPSSKPMKIQVKSLEQLLDKSPVPSNYNEAYDSHHGQNTCAPDTAPIDLSMDVLDLSKKPTSKPIQKEVIPTRPPTPPAVLIAESEPAARSAEDPKFDLSTLEKNHQLFLAQQQQLMNDAMPKIVDPTQYLQQLYRNLVFPPINPFFLQNSFLPNNLSDLQKFAPLMNQMFGGNVAATGAPMLTLDANKTHSNNSAAAMLPQVSPLMSDKSSTPTHSSASPASMSQMLPKSLTSPTPSNASLNIPRHPHMPSTVLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHIMRGRGASSAAAMNNITHLQAAFAQAHNNGGGSMGSSPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVAPNHVMLSGSGANGLPSLPNGQQYNFNHLNSPNINGSAMEDDEPKLVIDEDDDDDDIETIPDENDTEPDNDESYTEEPLPMPQEEVKPQQTTEPNEAAKKVAETILEQAIKAGQNSNTIAKPDAPAPAANTMKSMIAQAESVGKFLKEVASSPFKDESQDLVPVSKLVDNATSNAVSFNNYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDIATSAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSVYVPTEDVNEPIPVPKSVEEIEQQQRQREEEERLRKAEEAQQLERERREKEQQRQQQQQKQQQQQQEQEQHQQLLKQLAAAQLSQLNAAVTAATGAAGSSPKNDAGQIASSELPFKCHLCESSFGERFQCLDHIKVQHAQEFALLLAKGAIDTDADVNQMMHAAEDEDRRSAANDESSTAGRNGSSGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGRHHSGGATGDLSTAGNSGSDFSDDEQTPTPTPTATATPTPATSMMMMAAANHAALSMRAPKFQELLNKANEWRASRLTSSLGADQKENIAAEEHNQHQSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -