Svar007654.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- zfy1
- Assembly
- GCA_949127995.1
- Location
- OX421843.1:19543123-19547393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.021 1.5 9.8 0.1 1 23 367 390 367 390 0.94 2 12 1.5e-05 0.0011 19.7 2.2 1 23 395 418 395 418 0.96 3 12 0.00046 0.033 15.1 2.7 1 23 423 445 423 445 0.97 4 12 0.092 6.5 7.8 3.9 2 23 452 473 451 473 0.94 5 12 0.00015 0.011 16.6 2.4 2 23 481 503 481 503 0.95 6 12 0.0012 0.083 13.8 0.2 1 23 509 532 509 532 0.95 7 12 0.0027 0.19 12.7 0.7 2 23 543 565 542 565 0.93 8 12 1.2e-05 0.00084 20.1 0.4 1 23 594 616 594 616 0.97 9 12 3.7e-05 0.0026 18.5 1.5 1 23 623 645 623 645 0.96 10 12 0.00042 0.03 15.2 0.2 3 23 653 673 652 673 0.97 11 12 0.03 2.1 9.4 1.5 1 23 680 702 680 702 0.98 12 12 0.11 8 7.6 6.7 1 23 708 731 708 731 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTTGTCGTACCTGCGCGAAATGTGATTTTGAAGATGAAACCAACTGGTTGGACCTATTTCATCCGATACCGAGTTGGACACACGAAATGATACAAATACGCGCAGAGTTTGGCCACTGGAAATTGGAGATTTCTCAAAACGATGGATTGCCGCAAAAAATCTGTTCAGATTGTTTTTCCAAGTTTTGCAACGTATACACATTTCGGCAGTCGTGTCAGGCGGCACAAGTTAAGCTAAACAACATATTTGATAAAATCGAAACGCATAGCATGGAGGACGAGACTATGGACAATGCATTGGAGCGGGCCAAGTGCCGGCTGGAAGCTGTAGAGTATCAAAGTAATAAGACGAAATTCAAACGCTTGGATATGCTTGAGTACGATGATGAAGGTATGGACAGAGTCGGAATGCCAGAGGAAGTAGACGACAACAATAGTGCGACACTTAGATACGCACAATCGGAGGAACATTCATTGAACCAAAAAGAAAGTATAACAGACGACAGAAAAGTAGATGCTGCTGATGAAACTGAAACgcaaaattatgtaaattccTTGGACCAAAGAATAGTCGTCAAAGAAGTCGAAGATGCAACCGTTAGTCATAACACACAAATCCTTGATAATCCGTTGGAGGATCAAACGGAGCAGGTTTCAGAAACTACAATCACAACATACATCACTGCCGTTAACATCGAAGTAGTTGAAGATGATAATGAGGAAACTGCCCTAATAAACACAGTCCATTATGACGAAGACCACGGTGAGGGAGAGGAAGAAGATCTTGTACAGTTTGTCGGTGATGAGGAAGAAGAGTATGATGTCTTTCAAGACGAAATAGATGAAGAAGAAGCGGAATTGGAGTCCTTTGAACCATTAACAAATGCCAACTTTATAGCTTTAGACGACGCGATGGAAGATGAGGAGGAGGAGCATGAGTTCGATAAAAATTTCTGCAATGATGGCAAACTAATAAGCTTTACATTCGAGTGCAAGTTCTGTTACAAGTCTAAGAATACGCCTAGTCTGCACTATAACACACAAGAAGCACTGCTCGAACACATCACAGTGAAGCATAATTCGGAGCATCCCTTCGACTGTCCACAGTGCGAGTTGGGTTTTCGCGATGCTGCCTCCCGTACCATGCACTTAAAAGATGCGCATGTCGAGAAGGGTTATACCTGTGATGTCTGTGGCAAAAAGTATGCGGATCGCTTTAATCTGCGCCATCACGTCGAAAAGTATCACAGCGAACGTGACTTTGAGTGTGAACTTTGCGAAAAGCGTTTCTATTCGCGAAAGAGTCTCAACTATCACAAGAAGTGGCACAATCCGGAAAGGCAATTGAAGTGCGCCTACTGTGATCGGCTCTTTATTAATCAGCGGCATCTGAAGTGTCACGAGGCTACACATACCGGCGTCAGGAATAGCGAGTATTGCTCGTTTTGTGGCAAATcttttatacatttaaaaacctTGCGTTGGCATATCTACCGACAACATGGTGGTGAGAAACCCTTCAAATGTGGCAACTGTCCTGAAGTTTTCGCCTCTTACTCGGAGAAACGTTTACACATGCTGGAGAATCACTTGGAGAATCTAACGTCAATGGAGAAAACCGAATGTATGTTGTGCCACAAGCGCTACGAGAACGAAACCGATCTCAAAGAACATATGGCCGAGGACCATCAGCCGCGACAGTCGGCGGCACTCATCATTAAGGATAATAAGCGTGTGGTCAAGAACAAACGCCAGAAGCAGTACAGCGGCATATTTCAGTGTACACAATGCGATCAGCGTTTCAATATGAAATCGGCGCTTGAGCGCCACGTCGCAGTGCATTCGACCGAAGGCCGACCACATGCCTGTCCCGAGTGCCCGAAACGCTTCAAACGCATACAGGACATGAACTGGCACCGCAAGACCCACTCCAATGAGAAGCCAAATATTTGCGATGTCTGCGGCAAAGGTTTCGCGCTAAAGTATGTGCTCACGCAACACAAGCGCAGTCACGAAGTGCTCGAGAAAAACCACAAATGTTTGACCTGTGGCAAGGCATATCTATTTGAGAAGTCGCTACGCGTGCACGAGCGCGTCCACACCGGCAAAAATTACTACAAATGCGATTTGTGTAGCGAAAGCTTTGTgacacatattaaatttaaatgtcACATGCGAAAAAATCATACCTCGGAGGCTAATACAAGAGAACTTCCCTTGGACGAATTAATAAACATTGTGATTCCTTAA
- Protein Sequence
- METCRTCAKCDFEDETNWLDLFHPIPSWTHEMIQIRAEFGHWKLEISQNDGLPQKICSDCFSKFCNVYTFRQSCQAAQVKLNNIFDKIETHSMEDETMDNALERAKCRLEAVEYQSNKTKFKRLDMLEYDDEGMDRVGMPEEVDDNNSATLRYAQSEEHSLNQKESITDDRKVDAADETETQNYVNSLDQRIVVKEVEDATVSHNTQILDNPLEDQTEQVSETTITTYITAVNIEVVEDDNEETALINTVHYDEDHGEGEEEDLVQFVGDEEEEYDVFQDEIDEEEAELESFEPLTNANFIALDDAMEDEEEEHEFDKNFCNDGKLISFTFECKFCYKSKNTPSLHYNTQEALLEHITVKHNSEHPFDCPQCELGFRDAASRTMHLKDAHVEKGYTCDVCGKKYADRFNLRHHVEKYHSERDFECELCEKRFYSRKSLNYHKKWHNPERQLKCAYCDRLFINQRHLKCHEATHTGVRNSEYCSFCGKSFIHLKTLRWHIYRQHGGEKPFKCGNCPEVFASYSEKRLHMLENHLENLTSMEKTECMLCHKRYENETDLKEHMAEDHQPRQSAALIIKDNKRVVKNKRQKQYSGIFQCTQCDQRFNMKSALERHVAVHSTEGRPHACPECPKRFKRIQDMNWHRKTHSNEKPNICDVCGKGFALKYVLTQHKRSHEVLEKNHKCLTCGKAYLFEKSLRVHERVHTGKNYYKCDLCSESFVTHIKFKCHMRKNHTSEANTRELPLDELINIVIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -