Svar006593.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421843.1:5573420-5575998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.074 5.3 8.1 6.1 1 23 134 157 134 157 0.96 2 12 0.00014 0.01 16.7 1.9 1 21 164 184 164 185 0.94 3 12 0.00084 0.06 14.3 2.8 1 23 194 216 194 216 0.97 4 12 0.00067 0.048 14.6 2.8 1 23 222 245 222 245 0.97 5 12 0.0026 0.18 12.7 2.1 1 23 250 274 250 274 0.93 6 12 0.007 0.5 11.4 3.5 1 23 280 303 280 303 0.97 7 12 0.15 11 7.2 2.9 2 23 455 476 454 476 0.95 8 12 1.5 1e+02 4.1 3.0 1 23 483 508 483 508 0.88 9 12 0.00021 0.015 16.2 2.2 1 23 513 535 513 535 0.97 10 12 0.0001 0.0074 17.1 4.3 1 23 541 564 541 564 0.97 11 12 0.00012 0.0082 17.0 0.6 1 23 569 593 569 593 0.93 12 12 0.00012 0.0084 16.9 1.5 1 23 598 621 598 621 0.95
Sequence Information
- Coding Sequence
- ATGGAATTGCACTGGAAAACTGATATTATAGAATCGGATCATGAGTCCGACATACTCTCAAAACTAACAATTGATCCGGCGGTAACAATAGAAAACGAAACGGACGTAAAAGCACGTAAAAGCGAGACGGAAAGCGATCATGATGGTGGACAGGATCATTTTAATTACGATGAATTATATGAGAAAGTTGACGATGATATTAAGATAGAAGTGGAATCCGTACTAAATGAAAGAACAGGAACTTCAAACGACGAATATGGGCATCAGCAAGAAAATGATGATGTGGATTATTTCGAGCATACTCGTACGGATCGAGAACCAGAAGCTTTTAATGGTGAAGAACAACCGCCTTCAAAAAGAACCAATCAgcgcacaaaaaaacaattgggCGATCCGCCGTTCGAGTGTGAGATGTGCGGTCACATGTGTGCATCACGCACACTACTCTCCTCGCATCGTCATCGCAAACATCGCCTCATCGAGAACGAATTTCCATGCCCCAAATGCAAAAAGACATTTAACACGCGCAAACGTCTGCAACAGCATGAAAAGCGACCGACCTGTGCTACCTATCCGGAATTCATTTGCgaatattgcaataaaaaatgcatcGGACTATCCAACTTTAATATACATCTGCGCtttcacaaaaaacaatatccGTTTGTCTGCCATATATGCGCCAAGGGCTTCATGATGGCCACACATCTGACTACGCACATAAAATCAAAGCACGAAAATCAGCGTTTCTTTTGCGAGAAGCCCAACTGTGGCAAGTCCTTTCAAACGATGCACTCGCTGAGGATACACGCTTACACGCATCTGGAAACGATGCCCTACAAGTGCGAATACTGCGATCGCAATTACCCGACCAAGGGCAGgcTGCGCtgtcatatacaaaaatctcaTGGTATTCAACACACACTCGAGGAGCTCGATCGTATGCTGGTGGCAGAAAAGATTACACTTAAGGCAGAATGGAAGCCGCTCCACACGGAAGTGGTCGAAGATATGGAAGAAGAGTGTGCGGACTCGATAACGATAACAGATGAAATTATTGTAGATAAAGACGAGCTGCCCTTAGAATATTTAGCTACTCAGCATCTTGTAGAAAACCTAAACAATGTTTTTGAAGATCCAACATATGGACAGGAATCCAACCACGAAAACATGGTGTACGTGTCACCAGAACTGAAACATGAACAACATGAAGCAGCAGATGAATAtaatgaaacaatttatacACAATCGCAGCAGCTAACGTCAACGATGAAACCTCCGGCGCCTGTGGCCATACAAAATCATCAAGACGATAACACGCTGGATGACTTAAGACACAAGTGGCTACGTTTAAAAACAGTACCTTGTGACATCTGCCACAAGACCTTTTTGAATCGCAGCAAAATGTTGTTCCATCGACGAACTCACGACAAGAATAGAATACGTTTTCAGTGTTCGTACAACGACTGTGATCGCGAATATTCGTCAAAGCAAGCCTGCGATCTGCACTACCGACAGACACACCTCGAGACGGGTCATATCTGCCCCGTCTGTCAAAAGCACTTTGTCATACGTCAGACTCTTGAGGTGCATATGCGCTATCATACCGGCAGCTTTCCCTACGAATGTGAATGTTGCGATAAGAAATTCGCACAGAAGGGCCACCTGACAACGCATATGCAAGTGAAGCACAACAATCTGCGCTATATCTGCCAACAGTCGGGCTGTGGGAAGGTCTTTAAGAATAGCATGTCACTGCGAAATCACAGCTTTGTACATGTGGGAATGCCATTTCAGTGTGCCTTCTGCAATAAGGGCTATCCGCAGAAATCAAAACTCAAAACACACATCAGCCtcaaacataatcaaaaatttagtttagatCAGTTGGAGTCGATGCGTAAATTTAAGGACCCGCCTATAAGACACTCATTTGTGCGATTggaaacagaagaagaagctgAAGATTCAATAATTGAATTCGACGAAGCAGTTGTCAGAGAAGTTGAGGTTTCGCTGTAA
- Protein Sequence
- MELHWKTDIIESDHESDILSKLTIDPAVTIENETDVKARKSETESDHDGGQDHFNYDELYEKVDDDIKIEVESVLNERTGTSNDEYGHQQENDDVDYFEHTRTDREPEAFNGEEQPPSKRTNQRTKKQLGDPPFECEMCGHMCASRTLLSSHRHRKHRLIENEFPCPKCKKTFNTRKRLQQHEKRPTCATYPEFICEYCNKKCIGLSNFNIHLRFHKKQYPFVCHICAKGFMMATHLTTHIKSKHENQRFFCEKPNCGKSFQTMHSLRIHAYTHLETMPYKCEYCDRNYPTKGRLRCHIQKSHGIQHTLEELDRMLVAEKITLKAEWKPLHTEVVEDMEEECADSITITDEIIVDKDELPLEYLATQHLVENLNNVFEDPTYGQESNHENMVYVSPELKHEQHEAADEYNETIYTQSQQLTSTMKPPAPVAIQNHQDDNTLDDLRHKWLRLKTVPCDICHKTFLNRSKMLFHRRTHDKNRIRFQCSYNDCDREYSSKQACDLHYRQTHLETGHICPVCQKHFVIRQTLEVHMRYHTGSFPYECECCDKKFAQKGHLTTHMQVKHNNLRYICQQSGCGKVFKNSMSLRNHSFVHVGMPFQCAFCNKGYPQKSKLKTHISLKHNQKFSLDQLESMRKFKDPPIRHSFVRLETEEEAEDSIIEFDEAVVREVEVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -