Basic Information

Insect: Suillia variegata
Gene Symbol: -
Assembly: GCA_949127995.1
Location: OX421843.1:8544916-8548178[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00011 0.0081 17.0 5.1 1 23 169 191 169 191 0.97

2 9 1.2e-05 0.00086 20.1 0.6 1 23 197 219 197 219 0.98

3 9 0.0023 0.17 12.9 5.0 1 21 225 245 225 245 0.96

4 9 0.001 0.073 14.0 3.8 2 23 245 268 244 268 0.90

5 9 0.00014 0.0096 16.8 4.9 1 23 391 413 391 413 0.98

6 9 0.00058 0.041 14.8 0.8 1 23 419 441 419 441 0.98

7 9 7.8e-05 0.0055 17.5 6.2 1 23 447 470 447 470 0.98

8 9 0.00024 0.017 16.0 3.4 1 23 476 498 476 498 0.97

9 9 0.022 1.6 9.8 7.7 1 23 504 528 504 528 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00011	0.0081	17.0	5.1	1	23	169	191	169	191	0.97
2	9	1.2e-05	0.00086	20.1	0.6	1	23	197	219	197	219	0.98
3	9	0.0023	0.17	12.9	5.0	1	21	225	245	225	245	0.96
4	9	0.001	0.073	14.0	3.8	2	23	245	268	244	268	0.90
5	9	0.00014	0.0096	16.8	4.9	1	23	391	413	391	413	0.98
6	9	0.00058	0.041	14.8	0.8	1	23	419	441	419	441	0.98
7	9	7.8e-05	0.0055	17.5	6.2	1	23	447	470	447	470	0.98
8	9	0.00024	0.017	16.0	3.4	1	23	476	498	476	498	0.97
9	9	0.022	1.6	9.8	7.7	1	23	504	528	504	528	0.90

Sequence Information

Coding Sequence: atgagccTGGAACTTTGCAGAGCTTGTGCTGATTTCTCAAAAGATACAAATCCATTATTCGAGGAAAGTCAAAAACTGCTGTCAAAACTAAAAGATATCACTGGACTGCAGTTGGAAAACCTAAAAGACTGGCCACAGAATCTATGTAAATCTTGTGAAAAACAATTACTGCAAGCGCACAAATTCCGGGAGCGCTGTATACGCGCACAGAAACGCTTATCGACAATTTGcaatcaaaataatgaaacctCAAAGTGTAAGAAGAAACGAAAATCAGTCgattgtacaaaaataaaagaagaagtgCCACCCATCGAAGAGATAATcttcaatgaaaaaaatgaattcaaagAAGAGGAAAGCGAGGAAGATGGAGAGCTGCTGTTTAAGCAGGAATCAACTAAAGCTGAAGACAGTTCAAATGATAACATCAACTTCTTGGATGATACAAACAGCAGCAGAGATAAGGACGTGCTGGCCATCGAACCGGAAATAAAAAAGAACTTCATTTGTGACCAATGTGGCCAACATTTTACCGTCAAGTATCATTTTCAAATGCACATGTTGAGGCACACTGGCATCAGGCCGTATCCTTGCAAacTTTGTCCTAAGGGCTACTATGCGAGTAGTGATTTAAAACGTCATATGTTTACGCACACGGGCGAGAAGCCTTATCAATGCAAATACTGTGATCGCTGTTTTAATGATGGCAGCCATCGCCTTCGGCATACGCGGTGTAAACTTTGCAACGTATCCTACAAACGCCACTCACATTTGGCCAGACACAATCGGTCAGTGATGCATAAACAGAGCCTGGAGACAAAGCAAATATCAGAAAATCCAGCCAAAAATGAAGATGCTACTTTAAGAATCAAAGGGAAGCGAAAATCAAAGTGTTTAAAACCAGCAGTACCCATCGAAGAAGTGATCTGTAATGAAGaagttgcatttaaaaatgagaCGGAACAAGTGGAGAATAATAAAGAGGTTCTGCTGCTGAAGCGAGAACCGATTAACGAAAATGATAACTCAATTGACAGTCTCAACTTTTTGATAGAAAATGACACAGGAGATCGGGATATGTTAGCCATAGACCACGAGTCCAAAAGAGACAATTTAAAGGCATTGGAGTCTAAAGCCGGTGAAAAGTACAAGCGCCCCGAACACAACTTTGTGTGTGACCAATGCGGCAAGCATTACACAGTTAAGCATCTATTTCAGATGCACATGATGCGACATACTGGCATTAGACCATATCCTTGCAAACTTTGTCCGAAAGGGTACTATGCGACTAATGATTTAAGACGACACATGTTTAAGCACACCGGTGAAAGGCCgtacaaatgtaaattttgcgAGCTATGCTTCAATGACAAAAGTCATTTGTTAATTCATACACGCCGTGAACACACTCACGAACGCCCTTTTGCCTGTGATCAGTGTCCGAAAACATTTATCAGTTCTTGCACGTTTAGGACGCATCTGACGACGCACAGTGGCGTGCGTGCATTTagTTGTAAATTGTGCAACGTATCGTATAAACGCAATTGCCATTTGCATAGACATAACCGATCTGTGATGCACAAACAGAACCAGGAACAGCAGAAAACATTGTCGGACAATCAAACAGCCGAAGAATTAAAGTAA
Protein Sequence: MSLELCRACADFSKDTNPLFEESQKLLSKLKDITGLQLENLKDWPQNLCKSCEKQLLQAHKFRERCIRAQKRLSTICNQNNETSKCKKKRKSVDCTKIKEEVPPIEEIIFNEKNEFKEEESEEDGELLFKQESTKAEDSSNDNINFLDDTNSSRDKDVLAIEPEIKKNFICDQCGQHFTVKYHFQMHMLRHTGIRPYPCKLCPKGYYASSDLKRHMFTHTGEKPYQCKYCDRCFNDGSHRLRHTRCKLCNVSYKRHSHLARHNRSVMHKQSLETKQISENPAKNEDATLRIKGKRKSKCLKPAVPIEEVICNEEVAFKNETEQVENNKEVLLLKREPINENDNSIDSLNFLIENDTGDRDMLAIDHESKRDNLKALESKAGEKYKRPEHNFVCDQCGKHYTVKHLFQMHMMRHTGIRPYPCKLCPKGYYATNDLRRHMFKHTGERPYKCKFCELCFNDKSHLLIHTRREHTHERPFACDQCPKTFISSCTFRTHLTTHSGVRAFSCKLCNVSYKRNCHLHRHNRSVMHKQNQEQQKTLSDNQTAEELK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -