Svar016875.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421845.1:24439810-24443168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8 5.7e+02 1.7 0.1 2 23 261 282 260 282 0.89 2 12 1.4 99 4.1 4.1 1 22 288 309 288 311 0.90 3 12 8e-05 0.0057 17.5 0.3 2 23 344 365 343 365 0.97 4 12 3.3e-06 0.00024 21.8 2.7 1 23 369 392 369 392 0.97 5 12 2.4 1.7e+02 3.4 0.6 2 23 425 445 424 445 0.92 6 12 0.0065 0.46 11.5 4.3 1 23 464 486 464 486 0.98 7 12 0.0022 0.16 12.9 1.0 1 23 495 518 495 518 0.96 8 12 8.2e-05 0.0058 17.4 0.2 3 23 525 545 524 545 0.97 9 12 4e-07 2.9e-05 24.7 1.5 2 23 551 572 550 572 0.98 10 12 0.0055 0.39 11.7 2.2 1 23 578 600 578 600 0.98 11 12 0.0012 0.082 13.8 2.0 1 23 605 627 605 627 0.94 12 12 0.09 6.4 7.9 2.6 1 23 632 656 632 657 0.97
Sequence Information
- Coding Sequence
- ATGGTGCTTCAATGTCGCGCCtgtttaagcacccaatcggAGACTTACATCGATATGAATACGTCCATAGCGAAGGAGGACAGAGAAGACAGCTCATATATGGAATGTTTTCAGACGTACACACAGCTTTCCACGGACGATCAGCTTCATTTTCACCTGCCCGCCACAATTTGTGCCCGTTGTGCTCGAATTCTTCAAGTGTCTTATCGCTTTGTCAAAGTAGCACAACAGGCGGACGCGGTACTACGCGCCAATTTGGATATCAAAGCGCTTGAGCAGgtagaagaggaagaagaagagtcCGAAATGGAGCGTTTGGAGTTGTTGGAAGAATCCGTGGAGGAGGAAGAAGATTGCGTGTTAGAGGAGCTAGTGGAAGATGATGGTGGTGTCGACGAAATGGAGTTTTTGGAggttgaAGCTGTGGAGGAGCACATTGTCGAAGACTTAATAGATGAAGAGGAACCGTCATCGCAACACTAtgaactaaaagaaaaaacgcaaCTTGAGGAATATATAATAGAAGAACTTTTACCCACACAAGCAACTCTTTCAAGTGACCGGGATAGTTCCGTGATCAAAAAGGAGCATTTATCCAATATAATAACAGAGCATGCCgacgccaccgccaccacggAACCTAAATACCACTATGACGTGGACGAACTGGATGATGAGTATCTTGTGGAGTTTAACGATCATGAAAAGCATCAAGCAGCAAATCCCACAAGCGATTCAAATGAATCTACAATAGATTCCAGCGCCAGCggttttaaatggaaatgcaTCGTATGCAAACGCGTGCTGCGCGGAGATGTCTCATACGAGGGTCACATGAATATGCACAAACAGCTGCGTCCTTACAAATGCGACCAATGCTCGGGCGCTTTTCGATGCAAAAAAGCTTTGGAACGGCACAAGACGTTCCGTCATAATTCGGCGCAGCAGGATAAATGTGAGGAACAAACCAACTGTCAAGACAACGAGATTGAAGAAAACGttaaaagagaagaagagaaaacGTTTTGGGAGTGCGATATTTGCAAACGTCAGTTGCGTTCGGAATCTGCACTGCGCGCCCATCAGAAAACCCATCAAAATGAGCATGAGTGTAGCGTGTGTACAAAACGCTTTGCCAACGCGTATACTCTCCGCACGCACATGCGAAAATTGCACTCGATATTGTTTACGACGGCGGCCGAAAAGGATAGTGCCGGTGCTAGCGGTGGTGGTGCTAGCGGCGAGGATGGCTCTACCGATGACACTGTCGTCCAGTGTGAGCTGTGTAAAAAGAAACTGTTACGTCAAAATTTCGCCAAGCACGCTGCCATGCATGAGCGCAAACAAcaagctgctgctgccgccgtgGATGGAGCAgaacaaacaaagtttatgTGTGCCCATTGTCCTCGCGAGTGTAAAAATCGGAAATTGCTTTATCAACACGAAAGGATTCACGAAGGTGAGACGCCGGgaataattttcgtttgtgATCAATGCGAACGACAATACGCAACACAGAACTTGCTTGCACAGCATCATAAACAGGCGCACAAGGAGCGCGACAACATTTGTCCAATCTGTGGCAACGCTTTCAAGCTAAAGAATCAACTTGTCAATCACATGAAACTGCATCTCGAAAAGAACATTCAGTGTCCGCACTGCGAGAAGCGTTATGCGCGTCAATTCGATTTGAATGTGCATATGCGAACTCACACCGGCGAGTTGCCGTACGCTTGTCATCTGTGTGAGAAGCGTTTCGCTATTAAGGTGCGTCTGACCTATCATTTGCAGAAGCACGAGGGCATGAAACATCCCTGCAAGGAGTGTGGCGCCGAATTCAACtcgaaacaaaaactcaaagcGCACTCCTTCAAGCACAGCGGTATGCCATACCGATGCGAAATGTGCGACGATCATGGATTCGCTAATCGCGATGTCTTCAAGCGGCACCTAATGCGCGTGCATCATGCCacaatgagcgatgaggcacTGGTGGAGATGTTCCAACGAAACACGGGCAAAACGACGCGAATACGACCGATTGAAGAATTAAATCATGTGGTCGTGCACTCATATGGAGTGCCGACGAAGCAAGCAGAGAACGAGGAAAGCTTAATCAACGAAGAGGATATTGCCATGGAGTCAGAGGTGGTACACACGTGA
- Protein Sequence
- MVLQCRACLSTQSETYIDMNTSIAKEDREDSSYMECFQTYTQLSTDDQLHFHLPATICARCARILQVSYRFVKVAQQADAVLRANLDIKALEQVEEEEEESEMERLELLEESVEEEEDCVLEELVEDDGGVDEMEFLEVEAVEEHIVEDLIDEEEPSSQHYELKEKTQLEEYIIEELLPTQATLSSDRDSSVIKKEHLSNIITEHADATATTEPKYHYDVDELDDEYLVEFNDHEKHQAANPTSDSNESTIDSSASGFKWKCIVCKRVLRGDVSYEGHMNMHKQLRPYKCDQCSGAFRCKKALERHKTFRHNSAQQDKCEEQTNCQDNEIEENVKREEEKTFWECDICKRQLRSESALRAHQKTHQNEHECSVCTKRFANAYTLRTHMRKLHSILFTTAAEKDSAGASGGGASGEDGSTDDTVVQCELCKKKLLRQNFAKHAAMHERKQQAAAAAVDGAEQTKFMCAHCPRECKNRKLLYQHERIHEGETPGIIFVCDQCERQYATQNLLAQHHKQAHKERDNICPICGNAFKLKNQLVNHMKLHLEKNIQCPHCEKRYARQFDLNVHMRTHTGELPYACHLCEKRFAIKVRLTYHLQKHEGMKHPCKECGAEFNSKQKLKAHSFKHSGMPYRCEMCDDHGFANRDVFKRHLMRVHHATMSDEALVEMFQRNTGKTTRIRPIEELNHVVVHSYGVPTKQAENEESLINEEDIAMESEVVHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -