Svar001382.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Suillia variegata
Gene Symbol
L
Assembly
GCA_949127995.1
Location
OX421842.1:17988493-17997135[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 7.4e-06 0.00053 20.7 1.7 1 23 203 225 203 225 0.98
2 18 0.62 44 5.2 5.8 1 23 231 253 231 253 0.98
3 18 3.2e-07 2.3e-05 25.0 3.1 1 23 259 281 259 281 0.99
4 18 1.5e-05 0.0011 19.8 0.3 1 23 287 309 287 309 0.98
5 18 0.6 42 5.3 0.4 3 23 373 395 371 395 0.84
6 18 0.0048 0.34 11.9 0.2 3 23 422 443 420 443 0.96
7 18 0.088 6.3 7.9 0.7 1 23 542 564 542 564 0.97
8 18 0.0043 0.31 12.0 0.8 2 23 572 593 571 593 0.96
9 18 0.0005 0.035 15.0 0.5 1 23 601 625 601 625 0.93
10 18 1.2 83 4.4 0.1 1 19 630 648 630 650 0.93
11 18 0.055 3.9 8.6 0.6 2 23 661 683 660 683 0.95
12 18 0.0041 0.29 12.1 2.7 1 23 726 748 726 749 0.96
13 18 0.0069 0.49 11.4 4.7 2 23 952 974 951 974 0.96
14 18 0.16 12 7.1 0.1 1 23 980 1002 980 1002 0.92
15 18 1.1 81 4.4 0.2 2 23 1010 1031 1009 1031 0.95
16 18 0.98 69 4.6 1.6 2 23 1129 1150 1129 1150 0.94
17 18 0.0038 0.27 12.2 0.0 1 23 1160 1182 1160 1182 0.96
18 18 0.35 25 6.0 1.2 1 23 1189 1211 1189 1211 0.93

Sequence Information

Coding Sequence
ATGAtggctttaaaaatgttatatcgGGGACCTAGTTCGAGACTTGAAAACCTAATTGAGAAAATCCAAGCCACCAAGGAAATTGTAAATGCCgATATGTACTCAACGCACACCTCCTCCAGCTATTCGCCATCCATATCCGATGGTACCATCACACCCAATTCActgcatcatcatcatctccAGCCGCATTTACCACCGCATCACTTGCAATTGCAAAGTTTACAGCATTTACACGATGCCGAGGACGTTGCCGGTGCTCAGACACAACGTCTACGCAAGTCGCAAATCGCCAAGACGAATAACGGTGCTGAGGCTAGCggaggcggcggcggtgaTAACGCCTGTGCCACCGACGACAATGAGGATGAGCTGGTTGACAAAAATGACGTGCCCGCCGAATCGAGGACAATGGCGACAAAAACGCCAAATGATGTTAGCACGGAACAATTGAAGCGACAACAGGGACgacaccatcatcatcatcattatcgtcATGCTGAGCATACCATGAAAATGCCAACAAAGTTGCGAAAAATCGATAGGGACGCGGTTAAGTTTGATAAGATGACAGGCGACGGCATTAAGAGCAGCGTCGACGGATCCTATCAGTGTCAGTTCTGTGACAAATCATTTCCGCGTCTTGGCTACTTGAAGAAACACGAACAGAGTCATGCCGAACATCTTCCCTTTAAGTGTGACTATTGTGCACGGCTTTTCAAACACAAACGTTCGCGAGATCGTCACACCAAGTTGCATACCGGCGATCGTCGTTACAGATGTCCACATTGTGAAGCTGCTTTTTCAAGAAGTGATCACTTGAAAATCCACATGAAAACACACGACAATCAAAAGCCCTTTCAGTGCACCATTTGCAATCGAGGTTACAACACCGCCGCCGCTCTGACTTCGCACATGCAAAACCATAAGAAACAGGCAGCCATACTGGCCGCCGGTGGCAATCCCCAAGCGCTTAACTACAGTCCACGTTCCACGGGCTCCGCATCCAGCAATGGCAGTTTGCATAAGCGACGTTATGCCATGGCGTTGGCTAATTCGGACAGCAATTCCAGTCGAATGGAACATACTAAGCGCATACGCTCCtcttatttaaattgcagcttttgcaacaaaaacgacTTTAGCTCTTTGGAGCAATTGAATGCACATATACAGGCGACACATGAAAAAGAATTGGTTGCATCGTCTCCGCAATCACAGCCACCAATTGCCGTCGGTGAAAGCAATGCATTCCAACTTGCATGTGAGTATTGCACAATGAAGTTTCCAAATATTCCGGCCATGTTTCAACACATGCGCACCACACACATCGATCGCTTGACCAGCccaaattcatattttgagCATTTCAATCGACTTGCCGCCTCGGGCACCTTTAGTCCACGTTTGGTGGCATCGTCAAAAACGTTGCAGCGTGGAGGCATTGACGAGAAGACCATTAAAGTGGAACAAACTAATGCCAGTCCAAAGAGCCTGAATGAGggaaaacaacaagaagagGAACCCACCGATTTAAGCCAAAATAAACGTCGCTCAGAATCACCGCCTCTTCCCATGCAGCATAAGTCTCCACATGATATTCAAACCGAAAAACCGGGTGTCTTCTTTTGCAATCAATGCAATGCCGGATTGCCGgattttgaaagttttcgcAATCACCTAAAATCGCATATAGCACAAGGATTTAATCTGGTATGTCACCATTGTGGCCTGTCATTGCGTGAACAATCTGAGTACGAGGGCCACATAATCTCGCACTTTTTGATTTCTAGTTCGGAGTACAATTGCACAGGCAGTTGTCAAAAGACCTTCGCCAAACCGGAGGAACTGCAGAAGCATTTGCAGGATCAGCATGTTATTACCATGTACAAATGCTCGCTGTGTTCCGAACTATTCGATTCAAAAGTGGCAATTCAGGTGCACTTTGCTTGTTCGCATTCTGCTGAAACAAAAGTGTTACGATGCTCTGCCTGCATGGAGGTATTTCGAACAGAGtccgattttaatttacatgtCAAGACAAGACATCAAGCTGTCGCTAATGGTGGACAAACTTCCGGTGGTACAGGCACTTCGCTGCAGTGCATGTTTTGTCGCACAATTTGTTCTTCTGATCTCGAAATGCATTTCCATTTGGCGGCACATGCACGCCAATTTCGTTGTCCTTCCTGTCCGGAAACATTTCATGTTGAATTTCTGCTCGATCGTCATATGCAAAGTCATCATGGTAACGAACACGCCTCACCGCCCAACAAGGAAACCTTTGAAGAACATACTCCTTCTATTGCACCCAATCACGCAATGAGTCCCATGAATTCGCTTTATGTCAATGCGTTGTTTGGCAAGTCATCGTTAATGCCACTTGCGGTTGCCactcaaaataacaacaacagcattatTGATTATAATGTCGCCTTTGCAGCTGCCCATCTAAATAAGGGCATCTTTCCGAATACAACAAACATCGGAGCAGCAGGAAAATTTTACAGTCCGCTGCAGGTCGACACTGGCGCCATCAAACCCCATCCAGCTCTTATGTACGGCCTAAGTCAGCGTTACTTTGATACCAACCGATCTTTAATTGACATGTACGCACAGCACCAACAAGACAAGCAGTCCGTCGCTACCGGTAATTATTTCATAAGTCCTAAACATCCTGCCACCCCGCAATCACAACAAGAACCCGTCAGTCGTCGTACCCCAACTGAGGCTGTGGCGACACCTACAGCAGGTTTTAGCTGCGACATGTGCGATCGTAATGATTTTCGCTCCGAAGTCGAGATGCATGGACATCGTAAAGTTACCCACAATATGAAAACTGGCGTCAGTTTGCGTTGCGCCTATTGTTCCGGTAATTTTAAGTCGCGCAATGAGCTAGAGCACCACATGAAGACATGCCACAACTCGACGGGCAAGCACAAGTGTCTGATTTGCGACGAAATATTTCCATCGCCTGCAATACTGGCAGAGCACAAACTGCAGCACTCCAAGGTTGGACAGTCGGGCAAATGTTCGCATTGTGCAAAGCCATTGGGCGATGTAAACGCTTTTAAAGCGCATCTCTCAGAGCACAATAACGAGGCACAGATGCCGGTACAGTGCATCTGCTGTCGTCAGTCGCTGCATTCGGACTTTGAGATCGGACTTCATGCGAAatttcacACTAAATCCTCCAGCATGCCAGAAAGCGTATGTGCCCTGTGTCTTGAGCCCATCCAAAACATTGCCAACGAGGCTAAAGTTTGCGAGAAGTGCTGTCGCAAACACAACTTCAATTCGTCTAAGTACAAGCACTCACAGCGCGAAGCCTTtgatcatcgaaataacgaaTTGCGAGGTAGCACCGGACATTATGTTGAGAATCGTTGCAATCTCTGTAAAATGATTCTGCCACATGCACATAAACTGCAGGAGCACTTAGTCGAACACACATTTGCTGGCTGCGAGGATCGTGGCTTCATCTGTTATATTTGTTCAGCGGTCTTTACAGCACCCAGTGGGCTGCTGAATCATATGACGGAACACGGTTTGAATGCGCGCCCTTACGATTGCAATTTATGCACCGAGAAGTACTACTTCCGAGCTGAATTGGATCATCACTTGGTAGATCATGAGTTGCGCAATATAAAAGGCGAAGAAGctgcaaataatacaaaaccgAGTGTTGAGCAAAATGCGCCGCCACCGTCGACTTTAGTGAAAAACGTCGATTTACCCTTGACCACTGTTAAACAAGAAATACTCGAAGCTGACAATAGATCAAATGTAGGCGAAGACGACGAATATATCGAAGTAGAGAAGGAAGTAGCAGACGTCCAACTACAgctacagcaacagcagcagcagcagttggaAAAGAAGCAAGAAGCAACCGACGATTCCAAAGTAGATTCAtag
Protein Sequence
MMALKMLYRGPSSRLENLIEKIQATKEIVNADMYSTHTSSSYSPSISDGTITPNSLHHHHLQPHLPPHHLQLQSLQHLHDAEDVAGAQTQRLRKSQIAKTNNGAEASGGGGGDNACATDDNEDELVDKNDVPAESRTMATKTPNDVSTEQLKRQQGRHHHHHHYRHAEHTMKMPTKLRKIDRDAVKFDKMTGDGIKSSVDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSASSNGSLHKRRYAMALANSDSNSSRMEHTKRIRSSYLNCSFCNKNDFSSLEQLNAHIQATHEKELVASSPQSQPPIAVGESNAFQLACEYCTMKFPNIPAMFQHMRTTHIDRLTSPNSYFEHFNRLAASGTFSPRLVASSKTLQRGGIDEKTIKVEQTNASPKSLNEGKQQEEEPTDLSQNKRRSESPPLPMQHKSPHDIQTEKPGVFFCNQCNAGLPDFESFRNHLKSHIAQGFNLVCHHCGLSLREQSEYEGHIISHFLISSSEYNCTGSCQKTFAKPEELQKHLQDQHVITMYKCSLCSELFDSKVAIQVHFACSHSAETKVLRCSACMEVFRTESDFNLHVKTRHQAVANGGQTSGGTGTSLQCMFCRTICSSDLEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSHHGNEHASPPNKETFEEHTPSIAPNHAMSPMNSLYVNALFGKSSLMPLAVATQNNNNSIIDYNVAFAAAHLNKGIFPNTTNIGAAGKFYSPLQVDTGAIKPHPALMYGLSQRYFDTNRSLIDMYAQHQQDKQSVATGNYFISPKHPATPQSQQEPVSRRTPTEAVATPTAGFSCDMCDRNDFRSEVEMHGHRKVTHNMKTGVSLRCAYCSGNFKSRNELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCAKPLGDVNAFKAHLSEHNNEAQMPVQCICCRQSLHSDFEIGLHAKFHTKSSSMPESVCALCLEPIQNIANEAKVCEKCCRKHNFNSSKYKHSQREAFDHRNNELRGSTGHYVENRCNLCKMILPHAHKLQEHLVEHTFAGCEDRGFICYICSAVFTAPSGLLNHMTEHGLNARPYDCNLCTEKYYFRAELDHHLVDHELRNIKGEEAANNTKPSVEQNAPPPSTLVKNVDLPLTTVKQEILEADNRSNVGEDDEYIEVEKEVADVQLQLQQQQQQQLEKKQEATDDSKVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-