Svar009164.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421843.1:36466013-36474398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.25 18 6.5 0.9 1 23 1786 1809 1786 1809 0.94 2 13 2.6 1.9e+02 3.3 0.9 1 23 1963 1985 1963 1985 0.94 3 13 0.00077 0.055 14.4 2.8 2 23 1988 2009 1988 2009 0.97 4 13 4.4e-05 0.0031 18.3 0.2 3 23 2017 2037 2015 2037 0.98 5 13 1.1e-06 8e-05 23.3 3.6 2 23 2044 2065 2043 2065 0.97 6 13 8.6 6.1e+02 1.6 0.1 5 23 2078 2096 2077 2096 0.96 7 13 2.2 1.6e+02 3.5 5.4 3 23 2103 2124 2101 2124 0.93 8 13 0.061 4.3 8.4 0.1 2 23 2135 2155 2134 2155 0.96 9 13 3.2e-05 0.0023 18.7 0.8 1 19 2161 2179 2161 2183 0.94 10 13 9.3e-06 0.00066 20.4 1.2 1 23 2191 2213 2191 2213 0.98 11 13 0.00017 0.012 16.5 7.6 1 23 2219 2241 2219 2242 0.96 12 13 0.0016 0.11 13.4 6.5 1 23 2247 2269 2247 2269 0.98 13 13 0.0028 0.2 12.6 6.0 1 23 2275 2297 2275 2298 0.96
Sequence Information
- Coding Sequence
- atGGTGGAAAACGTACAGTGTCCAGTATGCACGCTATTTCTTCATGCGGGAATGAATCTCTCCGATCACTTGGAAACGCATCCAAAGGAACAAGTTATCAAAGCGCTTGTCCAGTTGACTATAACCGGAGGTGGTGGAGCTAGCGTTCTGGCTGCTCAATTAGCcagtagcagtagcaacaacaacgaaaagaaaTCGGAACCAGCAGCAACGGTTGATTtggcgaaaacaacaaaaactactacCACAATAGCAACACCCGAGAAGGACCATGATTTAAGCAGCAATTCTGCAAGCAACTCATCCTCTTCGGTCGGATCTGGCATTGGTTTGTCTGGTTCTTCTAGTAACAGTCTTAATTTCGGTACTAACAATTTTTCGCAAAGAGCAACAACATCTACACCGCAATCAGCATCAACGCCAATCGCCACAACAACgcagaaacagcaacaaattgttGAAAGCTTAATCACACCCATACCACCGACTTCTTCCAGTGTTGATGTGTCAAAGAATAGCAACATTttccaacagcagcagcgacaaaaAACCACAACTACACCACCAACACCGACACCGACACAAGCATATCAACATCGTTTTGGAAGAACGGAAGCAACACCAGCTGCAACCActgcaacagcaataacattAGCAAATGTTGGCGGTGTCGAATTAGCTGAGTCACCAGTGATGCCAACTGATTTTAGCACATTTGCCGCAAATCGTtttcaacagcaacatcattcgcagcaacaacatcacgCAGCGACAAGTCAattacaacagcagcaacaacaacaactacaagcTCCTTTAGCACAGCAACATGTTAGTAGTGCTGCGcatctacaacaacagcatcgtACATCGCttccaccaccgccgccaccgccattGCCGTCGACGCAACAAATCACTCAGCAGCAAttgccaacagcagcagcatttcaaacgctgcagcagcaacaacactcACTGCTCTCAACAGCACCACCAACCGCTACAACAACAGTGCATCGAAGTCAACATgtgcatcagcaacaacaacaacaacaacaaaatttaaaaatgatatatTCCCCAGCTttgccgccaccaccaccgctgCAGcTTTTCTCCTATCAGCCGCCAGCGCAGCCGCAACATCAAAAACCACCGCCCGCCTATGGCACTGCAATTAGTCAAATTCGATCTCAACACAACCAAAataagcaacagcaacatgttGTCGCCGCTATGCCGACtcctgcaacaacaacagcagcggctgTGACACATCATCATGTTCACACTCATGCACACGCTTTCCCCCATCAACATCAACAccatcatcagcagcaacatcaacagcacATCCGTAATGCTGGTTCATCAGCATTATCATCGACATCGTCAGCGTCATTGATAGCAACGAAGCACATGTTCCAAATGCGTCCAAACGAACTTCCACCACCGCCGttaccaacaacagcaacgccTGCGCatcaacaaaagtttttaagtgaacaccaccaccagcagcaacaacaacaaccaacaaaacaacaacagcagcaaaatcaGCAGCATTATGTCAGTAACATTTCTACCGCCGCAACAATCAATAACGAATTCTTTAATGCGACGCAACAGCGCGCAACTGCGGtttcaacaacagcagcaacaacacaagccGCAGCAGTTGTAGcagcaccaccaccgccgcctccGCCACCATCACCATCACCACAAATGCAACCTGtggtggctgctgctgcttctatCAGTAATCGTCAAACTAATTCACCATTTGCTTCGTTTCTGGTCGGCGCAGCTCCATCACCATCGTCAGTTTTACGCTATGCGGAATCTCCGGTGGCTCACTATTTGGAACGCGACAACGGTGACTTTATTGTTCAGGAAACGCCCAAACACATTGTGGAGTGCGTCGAAAAGGACAATGGTGAATTTTCAGTAATCGAGCGTATCTATCAATCGCCACCTAGTGTGTTACACATACACGACGAATgggacgacgatgacgacgaggATGAAGATGATCACGATGAGAATAATATGGAAGAAAATATGGAAGATTTGGATGATGAGCAGCGACGTAATGCcctaaacaacaaacaatccAGCGACGAACAATCGCAAAGTTCTGTGGCAGCTCATGCGGAAGCAAATAAATCGATGGAAAATGACGATGATGAAGAGGAATTTATGAGCATTGCAAGTGGTGACTCTGACCAAGAAGATTTAGTTGAGTCCGAGATGTCATTTAAAAAGCAGGTGAAACAAGAAACCGCCGCTgcatcaaataattttatgtcaGAACCATCAACGAGCAAAgccgctgctgccgttgccgtCTCTTCCCATATCACCCAATCTGTGACTGGCAATTCAAATTCGAGTTTAAATTCGAACACAAATTCGAATACCACAATGACACGAAAGAAATCTTCCAAAAACACCATCACCGTTCTCAGTGATGTCCAATTAAATCTTAATGAATATTTAGATTTGGTCGGAAACATAATCGCTTCGAGTAAAATCGCTGGGCAGCGTACAACAGCGTTTTCGGCCAGCGCTCCGATGCCATTACCAAAAGTGGAGAAAATCGAGCCACCGGATGAGTATGATATGCAAGAACAGCTGCAGAAAGAGGATCAACTTCAGCAGTTGTTGGATAGAGGAAGCCAAATggaccaacagcagcagaataCATCAGctccagcaacaacaaccagaacAACAGAAACAATGGAACCACCTATAATCGCCAACAAAATTGAGACTGAAGACTTagctgaaaataataattgtagcAAACAGAATAAGACTagcttaaatgaaaaaaacgtTAATGAAAACGAAGAACACGAAAAACCCACAACTTCAAGTATACAAAACGTTGTTATCGATGAAGACGACTGTAAGGAACACATTGCAATAATGTGTGCCGTCGCCGCTCCAAGTTCTCTGAGTCACGCCACTAGCGTCATACGCATGGCGGCTAGCACAAATCAgcgacaacagcaaaaattacaaaaacagcTTCAACAACAATCTGAAGGAACGCTCGAAAATGGCAGCGCGACCTTCTCAGCACCGCTGCCACGAGTTGCAGCCACAGACAATGATAACGTTGTAATCGACAGCATTACCAAGgaggaatttatttttcctgAAGATTTGTCACAGCCGCAACTGAAAATCGAACCATGTGACAATTTGACATCAGCAAGCAATCCAATGCAGCAAAAGattccaccaccaccaccactgaAACGTGGTCCTAAAAAACTAGTTATCAAACCTAAATCATCGATCGCCACAAAGACTGATGCAGCTCCACCTTCGCTAACAACAGCTCAAAATACAACTGCCAAAACGCTTATAAATGAACAGCCCAGTACTTCGGCAATGGCTGTAGCGGCTcaaaaacaactgcaacaacataACAATGAAAAGGAGCCAAAACAAGAGATTCAGGAAGTTATCATTAAAAGCGAACCCATTTCAACGCCTTTTGAGAACGCGTGTATTGGCAGCATTCTTGAACAACATTTGAAACTAGGCGCGTTACAACAATAtcagcagaaacaacaaccaGTCGAATGCAAAACAGAACAATCATTACTGCTGGCAACAGAAGGAGCCGAAGTCCAACTTGAAATCAAGCCGAAAATCGAAGAGGAAACACATCACGATTTGTCCCTGCAGCGAAACCAGCAGCAATTGCAAAAGCAACACTCTTGCGAAAATGTTGCTGATGATGCGGCGCGCGTATTGCTGGATTTTGCTAATTCAAAGAAGCACACTCAGCCAACTGCTGCCAGCTCAAGCGCCACCGCTTTTTTATCTTCCACATCGATTTTCTCGAATTCTTCGGTTGCCGCTGCAACAACAGTTGCTATCAACAATTCGTCGACTTCTTCCACCTCTGCGCTTGTAACTGCACTGCGCTGCGCTGACGATGACTATGCCAATGCAGCGATTGCCATCGATGGCAGCAATGTCGTGCAAGAAGTAGTAATTTCCTCTTCATATTCCTCGCAATCCGCTTCCGATGTAGCGTTGAACTCGACAGCAGCGTCCGGCACTGCTATGAATGAGCAGCAACACCAAAACCAGCACACCTTCACCGACTACCCCTTTAGTTTCCTGTACGGCAGTGGTAATGTTGCCCAACCGGTTGACACAAAGAACGGCAGTTTTTCGCCACTCTATCATGCTCACGCACATGATGCTACGACAGCGGCTACGCTCGCATCCGGCAGCAATTCAGCCGCGGCGACCACCCTCGACGATTCACAATCAGCGCATCCGCATTCTGCACTGCATAATAATCAGAATCATCATcaccaccaacagcaacaacaacaaaatcgtttCGGTGGAGGACACAGCGCGTCGCACTGGTATCATCATCATGCTGCCTCTAGCGCTAATTCTGATTTCGAGGCGGTATTAGCCGTCGATTGTTCTGCTGCCGTGGATGGTGGCGTTGGCAGCGACGTTGGGAAGTATCTCGACCTAGACGCTTGCAAGCGTGAGACGATTGTTGTTGTCCAGGCGGCGCCATCTTCTTCAACGTCGTCCTCTTTTACTGCCGCTACCACAGAGTCAAGTCTGGCCGGCGGCTGTTGCACTACAGACGCTCTGAATATACGCACCGATGAGAAAATGCCCGCTAAAGGCGAGATTTCGGAACAGGAGAGCAATTGCGACATTGAGAATTCGTGGAGTCAACcgATGTATGGCGATATTTCGGCACGCTTTTTCAAGAGCTCTTTTCCGGGAATATTCCAACAGGAAAACGGTTGGAACCACGATGAGTATTTTACTATACAGGATTTAAGCGCGTCGACAACTGCAGCTGCCACCGCAGCAAATGCAACCAACAGGCCCACCAAgagCTTTGACTTTCGTCTTCCGCTGGAAGCAACTACCTCAGCTACAGCGCTTGGCGGCGCCAACCACACTTTGCAAATATTTCCACAACATGGCAGCACCGGCTTCAGTGCTTCTGATGTGTTGCCCTCAACCTCCGCCGCCTCGGCTTCTGCTTCATCTACCACAGGCGTCGCGTCAAGCAGCAAAAAGAGACGTAAACGTGACGTCAAAGCGACAATCACACGCGTCCAACCGACCGCCACAGTTACTTCGCAACAGTTGCTACTGCATCAGCAACAttcacaacaacatcagcagcaactaCATCACCAGCTACAACAACAGGGTCCTACGACATCTACAGCATTACTGACTGGACCATCaactgctgccgctgcagcagctgcagctgcAGGAGTTGTTGCAGGAGTTCCTTCCAATTTGCAACCGAAGCCGCGCAAAAAAGTCTACCAATGTGCACACTGCACGGCTAAATTTCCCAAACTCAAGGATCGCAATTTGCACATGATCGACGAGCACAATTACGTGCGACGCAATCGACGCTTGATTTGCACACAGTCGAGCGTTAGCGCTACAATTACTAGCTCCGATTTAGCTGCAGCGGGCAATGCTGCTAACGTACTATCGCTACAACCACAAAGCTCCACCGTAGCAGCATCTGGCGATCTTGTTGAAGATTCTAAACAGGGCATTGTAAAAATCGAAGTAGACCAATCGGATCCTGCGTTAGCGCTCTCCGTAGACGAAAGTGTAGAAACCAAATCAGAGTTAATCGACGAAAAGGAAAATCTGCTGGTACCATTGGGTACCAGTCCAACTGACGTTGACACTAAACCAAgcaattttccactgcttGCTGTCACGCCGGCTACAAAACTGGCAACGCTTTACCGAATGCTCGTTTCCTACAACATTTCGACGCTTAAGCAGAGCCAAAATATAAGCGAACTGGAAGAGAAGCTCATCGAGACttccattttcttttgctaTGTCTGTCGGCGCAATTTCGGTTCGGTAAAGCAGTACGATGCTCATCTTACCGAGCATCCGGCCGAGTGTTTTACGTGCGGTAAGAAATTCCAGCGTTGGAAGAACTTTTCACTGCATCTGAAGCGTCATCTCGGTTGGAAGGAGTTCGGTTGCAGCGTCTGCGATAAAAAGTTTGTGGTGCGCAGCGCTTTAGTCGAGCATATGCGCATGCATACCGGCCTTACGCCGCTCAAGTGTAAAATTTGTGgtaaaaatttcaaacgttATTCCAATTTAACGCAACATCGCAAGCGTCACGGCCGGCAAATTGTACGCAAAAAGGAATACGTTTGTTATTGCGGCGAAGTGCTGCCCTCGAAGGCGCGCTTCCTCTGGCACAAGGAGACGCACGACGCCAAACCGAAATGCTGTCCCTACTGTTGTGATCGTTTCGTGCACGCCAACTCACTGCGCCGCCACATCCGACTCGCTCATTCGGACAAATTTGACTACACCGAACCGATGGAGTGCCCGATGTGCAAACAGATATTTGCCAAATCGTCGATTAAAGCACACATGGCTACGCATTCAATGGACACGCAACACGATTGTCCGATTTGTAACAAATCCTTCTCGACAAAATGGAATCTAAAGATTCACTCATGGGTGCACGCCAATCGCACCGCAAAGCCCTTCAAGTGTGAGCACTGCCCAAAGGCGTTTGTGCGCGAGGTGGACTTCAAGAATCATATGAACGcgcacaaacaaatcaaaccgTATACGTGTGAGTATTGCGGCTGTAAGTTCATACGCAAATACAATTATATGCGGCATAGGCGCGAGCATCACGGCAACAAGAAGTTCACCTGCGATCTGTGCAAGAAATCGTTCCATCGGCACTACTATCTTATCGAGCACCGGCGCATCCATACGGGCGAGCGGCCGTTCCAGTGCACCATTTGCGGCAAGAGTTCGACAACGAAGACGAACCACAACAAGCATCTGAAAATTCACCACTCCCGCGATCCGTTCACCGTGGAGGCGTAA
- Protein Sequence
- MVENVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQLTITGGGGASVLAAQLASSSSNNNEKKSEPAATVDLAKTTKTTTTIATPEKDHDLSSNSASNSSSSVGSGIGLSGSSSNSLNFGTNNFSQRATTSTPQSASTPIATTTQKQQQIVESLITPIPPTSSSVDVSKNSNIFQQQQRQKTTTTPPTPTPTQAYQHRFGRTEATPAATTATAITLANVGGVELAESPVMPTDFSTFAANRFQQQHHSQQQHHAATSQLQQQQQQQLQAPLAQQHVSSAAHLQQQHRTSLPPPPPPPLPSTQQITQQQLPTAAAFQTLQQQQHSLLSTAPPTATTTVHRSQHVHQQQQQQQQNLKMIYSPALPPPPPLQLFSYQPPAQPQHQKPPPAYGTAISQIRSQHNQNKQQQHVVAAMPTPATTTAAAVTHHHVHTHAHAFPHQHQHHHQQQHQQHIRNAGSSALSSTSSASLIATKHMFQMRPNELPPPPLPTTATPAHQQKFLSEHHHQQQQQQPTKQQQQQNQQHYVSNISTAATINNEFFNATQQRATAVSTTAATTQAAAVVAAPPPPPPPPSPSPQMQPVVAAAASISNRQTNSPFASFLVGAAPSPSSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKDNGEFSVIERIYQSPPSVLHIHDEWDDDDDEDEDDHDENNMEENMEDLDDEQRRNALNNKQSSDEQSQSSVAAHAEANKSMENDDDEEEFMSIASGDSDQEDLVESEMSFKKQVKQETAAASNNFMSEPSTSKAAAAVAVSSHITQSVTGNSNSSLNSNTNSNTTMTRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKIAGQRTTAFSASAPMPLPKVEKIEPPDEYDMQEQLQKEDQLQQLLDRGSQMDQQQQNTSAPATTTRTTETMEPPIIANKIETEDLAENNNCSKQNKTSLNEKNVNENEEHEKPTTSSIQNVVIDEDDCKEHIAIMCAVAAPSSLSHATSVIRMAASTNQRQQQKLQKQLQQQSEGTLENGSATFSAPLPRVAATDNDNVVIDSITKEEFIFPEDLSQPQLKIEPCDNLTSASNPMQQKIPPPPPLKRGPKKLVIKPKSSIATKTDAAPPSLTTAQNTTAKTLINEQPSTSAMAVAAQKQLQQHNNEKEPKQEIQEVIIKSEPISTPFENACIGSILEQHLKLGALQQYQQKQQPVECKTEQSLLLATEGAEVQLEIKPKIEEETHHDLSLQRNQQQLQKQHSCENVADDAARVLLDFANSKKHTQPTAASSSATAFLSSTSIFSNSSVAAATTVAINNSSTSSTSALVTALRCADDDYANAAIAIDGSNVVQEVVISSSYSSQSASDVALNSTAASGTAMNEQQHQNQHTFTDYPFSFLYGSGNVAQPVDTKNGSFSPLYHAHAHDATTAATLASGSNSAAATTLDDSQSAHPHSALHNNQNHHHHQQQQQQNRFGGGHSASHWYHHHAASSANSDFEAVLAVDCSAAVDGGVGSDVGKYLDLDACKRETIVVVQAAPSSSTSSSFTAATTESSLAGGCCTTDALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYGDISARFFKSSFPGIFQQENGWNHDEYFTIQDLSASTTAAATAANATNRPTKSFDFRLPLEATTSATALGGANHTLQIFPQHGSTGFSASDVLPSTSAASASASSTTGVASSSKKRRKRDVKATITRVQPTATVTSQQLLLHQQHSQQHQQQLHHQLQQQGPTTSTALLTGPSTAAAAAAAAAGVVAGVPSNLQPKPRKKVYQCAHCTAKFPKLKDRNLHMIDEHNYVRRNRRLICTQSSVSATITSSDLAAAGNAANVLSLQPQSSTVAASGDLVEDSKQGIVKIEVDQSDPALALSVDESVETKSELIDEKENLLVPLGTSPTDVDTKPSNFPLLAVTPATKLATLYRMLVSYNISTLKQSQNISELEEKLIETSIFFCYVCRRNFGSVKQYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCSVCDKKFVVRSALVEHMRMHTGLTPLKCKICGKNFKRYSNLTQHRKRHGRQIVRKKEYVCYCGEVLPSKARFLWHKETHDAKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIFAKSSIKAHMATHSMDTQHDCPICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -