Basic Information

Insect: Suillia variegata
Gene Symbol: -
Assembly: GCA_949127995.1
Location: OX421845.1:15988113-15992061[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0044 0.31 12.0 5.1 1 23 250 272 250 272 0.97

2 11 7.4e-06 0.00052 20.7 0.6 1 23 278 300 278 300 0.99

3 11 0.00064 0.045 14.6 1.0 1 23 306 329 306 329 0.95

4 11 0.13 9 7.4 5.4 1 21 335 355 335 357 0.94

5 11 3.7e-05 0.0026 18.5 2.9 1 23 363 385 363 385 0.99

6 11 1.5e-05 0.0011 19.8 0.3 1 23 391 413 391 413 0.98

7 11 0.0011 0.079 13.9 4.1 1 23 421 444 421 445 0.97

8 11 0.0013 0.091 13.7 0.7 2 23 451 472 450 472 0.97

9 11 0.0075 0.53 11.3 0.7 1 23 478 500 478 500 0.98

10 11 0.00017 0.012 16.4 1.5 1 23 506 529 506 529 0.95

11 11 7.8e-07 5.6e-05 23.8 4.3 1 23 543 565 543 565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0044	0.31	12.0	5.1	1	23	250	272	250	272	0.97
2	11	7.4e-06	0.00052	20.7	0.6	1	23	278	300	278	300	0.99
3	11	0.00064	0.045	14.6	1.0	1	23	306	329	306	329	0.95
4	11	0.13	9	7.4	5.4	1	21	335	355	335	357	0.94
5	11	3.7e-05	0.0026	18.5	2.9	1	23	363	385	363	385	0.99
6	11	1.5e-05	0.0011	19.8	0.3	1	23	391	413	391	413	0.98
7	11	0.0011	0.079	13.9	4.1	1	23	421	444	421	445	0.97
8	11	0.0013	0.091	13.7	0.7	2	23	451	472	450	472	0.97
9	11	0.0075	0.53	11.3	0.7	1	23	478	500	478	500	0.98
10	11	0.00017	0.012	16.4	1.5	1	23	506	529	506	529	0.95
11	11	7.8e-07	5.6e-05	23.8	4.3	1	23	543	565	543	565	0.96

Sequence Information

Coding Sequence: ATGTCTAGCAGAACTTCCGCCGTGTCTGTGGACAATCAAGATCTGCAGACGTATCTGGATTCTTTCAATAAAGAAATCGAGGAGGGAAATGGATCACTGGTGACGCTAACACCTGCAGCGGTTGAGGCTTTAGCCGGGGGAGACGCGGCGGCACAACGAATTCTGTGTGATGATGGAAATGGTAATGGACAAGAGGATGAGGAGGTTGAAGAAGATGAGGATGGCACCTACTTCGTGGATGAAGCGGGCAATTACTATATTCAACCCTCATCGTCGAAAGCCTCGATTACATTGGCCTCAGAGTCGCAGGAGGAATCGGAATTTGTTTCAGCAGCAAAAAAGAGACGCACGACCGTGttaaaaacgagaaaaatcaCCCGACTGTCAGGCAGAAAACGAGCAGCTGAGCACGAAGAGAAGGCGGATAAAGATGAGAATGAGGAGAATGATGATGAACTGGACTACGTGTTAATTgtggacaacaacaaacagtctTCTCACCCCAACAAGAACAACGCAGAAGAAGAGGTGGACGACCCTGACGATCCCGCTGCCACAACAACCATCACCTCCAATAAACAAATCTACGACTTCGACGAAAGTGTCGGCGAAATTAgagacgatgatgacgatgctGTCTCAGATACCGATTTAATACTAACTAAGCGGCTGGTACGCATAAAATCAGGCGCCGGCTCCTCGGGTGCTAACTGCTCAACAACGGATCTAAACGGTAGCGGCGTCGTCCATCGTTGTAACCACTGCGACTACACGACACAGAAACCATTCTTGCTGTCACGTCATATGAAAGCTCACTCTGAGGAGCGTCCCTTTAAGTGTTCTGTTTGTGAGCGAGGCTTTAAAACTAATGCTTCGCTGCTAAATCATGTCAACACGCACCTCGGCAACAAGCCACACGCTTGCAAGTCATGTGACAGCGCCTTTACGACATCCGGCGAACTGGTACGGCACGTCCGTTACCGGCACACTGGCGAAAAGCCGCACAAGTGTACTGAGTGCGATTATTCAAGCGTTGAACTTAGCAAACTGCGTCGCCACTTTCGTTGTCACACAGGTGAGCGTCCCTATCAGTGTCCCCACTGCACCTACGCCTCGCCCGACACATTTAAGCTAAAGCGTCACATGCGAACCCATACCGGCGAGAAGCCGTACGTATGTGACATCTGCCAGGCCCGATTCACTCAATCCAACTCGTTGAAGGCGCACCGTCTCATTCACAGTGTCGGCGATAAACCCGTTTTCCAGTGTACACTCTGTCCAACGACATGCGGTCGCAAAACCGATCTGCGGCTGCACATTCAGAAGCTGCATCATTCTGAAAAGCCAATCAAATGCCGTCGCTGCGGCAAGGAATTGGCCGATCGATATTCTTACAAAGTGCACGTCAAGACACATGAGGGCGAGAAATGCTTTAGATGTCAATTTTGCCCGTACGCTTCTATTTCTGGACGACACTTAGAGTCGCATATGCTCGTCCACACTGACGTTAAGCCTTATGCATGCCAATTTTGTGAACAGACTTTCCGCCAGAACCAGTTGCTCAAACGCCATGTTAATCTGTACCACAATGAGGACTACAAGCCGCCAAAGCCGCGCGAGAAATTGCATTCATGCCCGGATTGCAAGCGTTCGTTTACTCACAAAGGCAATCTGATGCGGCACATGGAACAACACGACCCCGAATCAAATACACAGCGGGAGAAATTGAAGTTGAAAATTGGACGATTAACACGCATAGAAGCGGACGGCTCTGTTGCGACCGTTGCCACCGGAAAATTGTACGACGACTTGGTCGAAGATGAGGAAATAGAAGAAGCGGAGAGCGACGACGAGGAAAATTACGAACTTACAGCGGAAGAGTACTATGAAATAATTGAGTCGGTGGACGAAGTGAAAGATAAAAAGCCGGTCATTACAGACGttcaggcaacaacaacaacaaaagcaactggGTCACAGTCGGTgtctgaaataaaaacaatttcaataaaaaaggaaCCTGACGGCAAAGAGTTTATGGCCGTCGAAATGGGCGATGACCAGCAATATATGTTCGTTGAAGTCATTCAGTATGAAGACGATGAGGATGAAGAGGAAGAAGGCGGTGATGACAATTTTACCGCAGTTGACAATGATAATGGCATTCaaACACCGATGCTAGAGGCTTCTACATCAAAAGCTGAGTTGGAGAGCTGCTTTGGATTTGATgtcAATGAAGAGTACATCGACGATTCCGATAATAAGGAAACAATGCAATTGATGGATATTATCGATGAGGACTAG
Protein Sequence: MSSRTSAVSVDNQDLQTYLDSFNKEIEEGNGSLVTLTPAAVEALAGGDAAAQRILCDDGNGNGQEDEEVEEDEDGTYFVDEAGNYYIQPSSSKASITLASESQEESEFVSAAKKRRTTVLKTRKITRLSGRKRAAEHEEKADKDENEENDDELDYVLIVDNNKQSSHPNKNNAEEEVDDPDDPAATTTITSNKQIYDFDESVGEIRDDDDDAVSDTDLILTKRLVRIKSGAGSSGANCSTTDLNGSGVVHRCNHCDYTTQKPFLLSRHMKAHSEERPFKCSVCERGFKTNASLLNHVNTHLGNKPHACKSCDSAFTTSGELVRHVRYRHTGEKPHKCTECDYSSVELSKLRRHFRCHTGERPYQCPHCTYASPDTFKLKRHMRTHTGEKPYVCDICQARFTQSNSLKAHRLIHSVGDKPVFQCTLCPTTCGRKTDLRLHIQKLHHSEKPIKCRRCGKELADRYSYKVHVKTHEGEKCFRCQFCPYASISGRHLESHMLVHTDVKPYACQFCEQTFRQNQLLKRHVNLYHNEDYKPPKPREKLHSCPDCKRSFTHKGNLMRHMEQHDPESNTQREKLKLKIGRLTRIEADGSVATVATGKLYDDLVEDEEIEEAESDDEENYELTAEEYYEIIESVDEVKDKKPVITDVQATTTTKATGSQSVSEIKTISIKKEPDGKEFMAVEMGDDQQYMFVEVIQYEDDEDEEEEGGDDNFTAVDNDNGIQTPMLEASTSKAELESCFGFDVNEEYIDDSDNKETMQLMDIIDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -