Svar016757.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421845.1:22853615-22857058[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00045 0.032 15.1 6.2 3 23 211 231 209 231 0.97 2 12 0.079 5.6 8.1 3.8 1 23 237 262 237 262 0.93 3 12 0.0024 0.17 12.8 0.2 2 23 270 294 269 294 0.94 4 12 5e-07 3.6e-05 24.4 0.1 1 23 306 328 306 328 0.98 5 12 0.00019 0.014 16.3 1.4 1 23 335 357 335 357 0.97 6 12 0.0012 0.085 13.8 0.2 1 23 363 385 363 385 0.98 7 12 7.7e-05 0.0054 17.5 1.7 1 23 391 414 391 414 0.98 8 12 0.15 10 7.2 2.7 1 23 420 442 420 442 0.81 9 12 0.0075 0.53 11.3 0.5 1 23 448 470 448 470 0.97 10 12 8e-07 5.6e-05 23.8 0.3 1 23 605 628 605 628 0.98 11 12 0.016 1.1 10.3 1.2 1 23 634 656 634 656 0.97 12 12 0.00018 0.013 16.4 3.2 1 23 662 684 662 684 0.96
Sequence Information
- Coding Sequence
- ATGGACAGTGAGAGTAAATTTAGCATTCACTCCATTTGTCGCATTTGTTTGACGCAGTTGAAAAGTGATAACTTTTACGACCTGTTTTGCACCAACGGGCTAGTAAAAAAGCTTTGCATTTGCACTTCGCTGTCGGTGGAACCTCAGGATGGATACCCAAAGAACATTTGTGGACTTTGTCACACACGGCTCAACGAGTTGCACGAATTTCAGAAACAGTGCGTCGATTCAGTTCAAAAGTTCCAAGATCTGGTTGCTGCTAACACATTCAGTGTAGATGTTGATGTCGAGGGGGGAgatcaaaatttaacattcgaAGACGAAGAGCGACCTGATTTCGATCCACTGCTCGATCAAAAGTTGGAATTGGTTGAAAACATAGAATCGAATCCATTTGACGAAAAAAACATCTTCAGCAGCGATTCGTCCTCAAGTGATTCGGAAGATGACATCAAAAGCTTTGGTGATAATGATGCCGATGCTACCAGTGATAGCGATGATGATAAGCCGCTGGCTttacgaaaaattaaagaggAACCTTGCAGTAATGATGAGGCAGTAATTGAACCAATTAAACCGAAACGCAAACGCATACCGGCCGCAGAGCGTCATCTACATCGCATCATTGACTGCCACATTTGCcaccaaaaatttaagaagtcTAAAAACTATCAGGATCACATGAAGTATCACAATGACAAACTGCCGCATCAGTGCACTATAGAAACGTGCCGTAAAGGCTTTAGCACGGAAAACGCACTTCGTATTCATGTTGAACATTGTCACGCTGAAACGATAGATAGTATCCCTTGCCCTGAGAAAGgatgtgaaagtacattcccGCGCACCCGTCAACTAAACAATCATCTCAAAAcgGTGCACAAAATGGATAAGGAAGCCCTTAAACAGCGCAGCTTTCCATGTCCTGACTGCGACAAGGTCTTTCGAGTTCCGATCGCACTTAAAAAACACATGTACAAACACAACGGCGAGGAGCTCCCGTTTCCATGCAACATCTGCGGTAAACGCTTCGTAATCAATTCAGAATTAAAGTGCCATCTAATGCGCCACGCTGgcataaaaaactttatctGCCCGTATTGTGGCGCCGGCAAGACAACTCGACAAGAGTTGAATCAGCACATTAACACGCATACACAGGAGAAAAAGTACAAGTGCGATTATTGTGATCATGTTTCGACTAACAAACAGGCTATGACCAATCATATGAAGGTGGTTCACGAAAACAAACGAGAATTCGCCTGTCAATACTGCGGCAAGACTTTCGGCAAAACTAACGCTTGCAAGATGCATGAACTGAGACACACAGGCGATATGCCATACAGATGCTCAATCTGTGACAAGGGATTTCTTTACGCCAAGATCCTCACTGTTCATTTAAAAACGCACGAGAAGTGGAAacgtgaaaaaaaagaagttccCGCCGACAAAAAACGTAAACGCAAAGTGAAGACTGAAGGTGCTGATTccgataaagaaaaaaaaccgccGAAGATTAAGGTTCCTAAGATTCCTAAAATTATAAAGACTCCTAGGATTATTGCAAAACGAAATGAAGCCGATGGTCAGTTACAGCCTCCACTTCACTCAATGGTACATGCCGAGGTAGTGGTGCGACAGAATCCACGACACGTAGAGCGCGTCGACATTTCGCAATTGGCGGGTACTTTTATTAATCCAATTTCATCGGTTCAACTGCCTTCCTGGCTACCGCAGGATGATTCCAGTATGACGACCGAGTATGCACTGTCACACGACAACTCTAACCCGCCTGCGGCCGCCGAATTTCCATTTACTTGTCCAGATTGTGGTCAAGGTTTTAACTTTAGTGGAAATCTTAAAACCCATTATCGAATTGTTCACGAGGGTATCAAGGACTATGCCTGTCGGTACTGTGAGCGTCGCTTTGGCAAGGCACTGAAGCTCAAATATCATGAAATGACGCACACTGGGGAAAAGCCACATGCGTGCACATTATGCGATTTTAAGTGTATAAGTCCTGATTCCCTTAAGCGCCACATGAAGGTGCATGACAAGccgccaaaagaaaaaaaagtaaaaactaaaaaggtAATGAGCTACAGAAGACCTCCTGTCGATCCGGCTGTCGCACTGGCAGCACGTGAGGAACTGGAAGTACATAAACGTAAAGAGTTAGATGAGAAACGTGAGGCTGAGCAGAAGCGTCAAGCTATTGCTGAGGCCGCAAAGGAACAGCTCACGTTAATGCAAAAACAGGAGGCAGAATTAGAGACATCGCagcaataa
- Protein Sequence
- MDSESKFSIHSICRICLTQLKSDNFYDLFCTNGLVKKLCICTSLSVEPQDGYPKNICGLCHTRLNELHEFQKQCVDSVQKFQDLVAANTFSVDVDVEGGDQNLTFEDEERPDFDPLLDQKLELVENIESNPFDEKNIFSSDSSSSDSEDDIKSFGDNDADATSDSDDDKPLALRKIKEEPCSNDEAVIEPIKPKRKRIPAAERHLHRIIDCHICHQKFKKSKNYQDHMKYHNDKLPHQCTIETCRKGFSTENALRIHVEHCHAETIDSIPCPEKGCESTFPRTRQLNNHLKTVHKMDKEALKQRSFPCPDCDKVFRVPIALKKHMYKHNGEELPFPCNICGKRFVINSELKCHLMRHAGIKNFICPYCGAGKTTRQELNQHINTHTQEKKYKCDYCDHVSTNKQAMTNHMKVVHENKREFACQYCGKTFGKTNACKMHELRHTGDMPYRCSICDKGFLYAKILTVHLKTHEKWKREKKEVPADKKRKRKVKTEGADSDKEKKPPKIKVPKIPKIIKTPRIIAKRNEADGQLQPPLHSMVHAEVVVRQNPRHVERVDISQLAGTFINPISSVQLPSWLPQDDSSMTTEYALSHDNSNPPAAAEFPFTCPDCGQGFNFSGNLKTHYRIVHEGIKDYACRYCERRFGKALKLKYHEMTHTGEKPHACTLCDFKCISPDSLKRHMKVHDKPPKEKKVKTKKVMSYRRPPVDPAVALAAREELEVHKRKELDEKREAEQKRQAIAEAAKEQLTLMQKQEAELETSQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -