Basic Information

Insect: Suillia variegata
Gene Symbol: -
Assembly: GCA_949127995.1
Location: OX421846.1:6338567-6343115[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.43 30 5.7 1.0 1 23 406 428 406 428 0.93

2 13 0.0042 0.3 12.1 5.8 1 23 434 456 434 456 0.99

3 13 0.00029 0.02 15.7 0.1 1 23 462 484 462 484 0.97

4 13 0.00026 0.018 15.9 2.1 1 23 490 512 490 512 0.97

5 13 8.6e-07 6.1e-05 23.7 1.7 1 23 521 543 521 543 0.98

6 13 4e-05 0.0028 18.4 0.4 2 23 550 571 550 571 0.97

7 13 0.14 9.6 7.3 0.6 1 23 973 995 973 995 0.94

8 13 0.007 0.5 11.4 7.5 1 23 1001 1023 1001 1023 0.98

9 13 0.00013 0.0094 16.8 0.1 1 23 1029 1051 1029 1051 0.97

10 13 4.7e-05 0.0034 18.2 1.1 1 23 1057 1079 1057 1079 0.97

11 13 2.3e-05 0.0016 19.2 1.3 1 23 1088 1110 1088 1110 0.98

12 13 1.2e-05 0.00085 20.1 0.6 1 23 1116 1138 1116 1138 0.97

13 13 0.00017 0.012 16.4 4.0 1 23 1144 1166 1144 1167 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.43	30	5.7	1.0	1	23	406	428	406	428	0.93
2	13	0.0042	0.3	12.1	5.8	1	23	434	456	434	456	0.99
3	13	0.00029	0.02	15.7	0.1	1	23	462	484	462	484	0.97
4	13	0.00026	0.018	15.9	2.1	1	23	490	512	490	512	0.97
5	13	8.6e-07	6.1e-05	23.7	1.7	1	23	521	543	521	543	0.98
6	13	4e-05	0.0028	18.4	0.4	2	23	550	571	550	571	0.97
7	13	0.14	9.6	7.3	0.6	1	23	973	995	973	995	0.94
8	13	0.007	0.5	11.4	7.5	1	23	1001	1023	1001	1023	0.98
9	13	0.00013	0.0094	16.8	0.1	1	23	1029	1051	1029	1051	0.97
10	13	4.7e-05	0.0034	18.2	1.1	1	23	1057	1079	1057	1079	0.97
11	13	2.3e-05	0.0016	19.2	1.3	1	23	1088	1110	1088	1110	0.98
12	13	1.2e-05	0.00085	20.1	0.6	1	23	1116	1138	1116	1138	0.97
13	13	0.00017	0.012	16.4	4.0	1	23	1144	1166	1144	1167	0.96

Sequence Information

Coding Sequence: atgtgcacAATTACCGAAAATCATCCGCGTTGGTCGCTTTACGCTAAGTTGCGCAAATGCGGTGAAATAACCGCTTCTAATGATGGGCGCCACTTTGGACTTAACTGCACGCATTGCCTCACAATTTTCCCTTGGATTGAAATAAAGGAATTTATAGAGCACTTGCACAAGCAGCACGCGAGCTTTTTTTGTACaacggagcaacagcaacaaaaacaaccgaatgataaaataaaatattttattcaagcATCGGAACCGTTGCAAACAAACATCGTATCAGTAGGCGCTGATGATGATAGCTTCAAGGAAGATCCGCTAGATTCTACGGACGAAGAAACTAGAGATTCAGCTAAAggtgaagaagaagaggaagatgCTTACGTTTCAGAAGAAGACTTGCAGGAGGAACTTTTTGAAGGATTCTGTGAGGAGGATGAGGATATTAAAGAAGCCGAAGAAATTCTAAAGTGTACTATTGAATCGATGAATGATGAAGTAGCTTCGGTAACACATTCCAAGAGTAACTCGAGCTGCTCCgataatgaaaacattttggaGCTGGATTTGGAATCTCATGGAAATCGTCAAGTTCTGAgttatatcattaaaatacatcaAGAAAATTCAATACTTTGGGACAGCGAGCACCCGTGCTATGAGCAAcgcaaaaaattcgaaatttatcgTGAAATGATTCGAGAGATTCTGGCACGGTTCAAAAAAACTCtgacaacaaaagaaatacgcGCAACGTTCGCAAAACTGAGAAAGCTCTACACCGATGAACTACTATGTGGCAACGAGGAGCAGCGGTCGCAAATACCTACAAAACTTTGGTGCCTCGAACAGTTAGACTTCCTCAGAGCGAGAGAACTTGCAGACAATGCTACGTTAGTGTTGCCCATCGATCAGTTAATTCCACTGGCTGAAATTTATAAGCTCCATCCGGTGCTCTGGGATTTGGACTGCGATGACTGTCACAATCGAATGCTACAGAAGACAGAACAACAGCAAGTACTGCAAGAAGTCAACCAACAGATGGGTTTAAATATGTCGCTTAAGCATATGCGGCTGCAGATCGTACGATTGCGCCGGTATATTCGATTGGAAAAACAGAAACGACTGGAATGCGAACAAACCAACGAAGAATTCGAGCCATCTCATGATGAGCTCTACGAGAAGCTGCAATATCTCGAGCCCTTTATAGGGCCATTTCGTTGCCACGAGTGCAATGAAGAGATTGTACAGTATCATGTGTTCAAAGCACATGTAGCCGCACACGAAGGACGTCTGCCGTATACGTGTAGCTACTGTGAGAAgggttttaaattgttttgcaattttcaaacCCATGTTCGACGTCATACCGGCGAAAAGCCATTTCCATGCGTTTATTGCGACATGAGCTTTGCCGCTTCAGGCGATCTCAAAATTCACACAAGGCTGCACACTAACGAAAAACCCTACATTTGCCATTTTTGCGGGATGGCATTTTCCACCAATAACAAACTGTACAAACATAAAGCTGTGCATGACCGCGTACGTATTCACAAGCGCTACGAGTGTACGCACTGTCCAAAGACATATTCCTCAAAGGAATCGTTAAATGTTCACATAAATTCACATTTGAAAATACGCAGCGCTGTGTGTCCTGAGTGCGGAAAGGGTTTCTTTGGGCGAAAGACTTTGCGACAGCATATGAATCTGCACGATAAGGTGAAGCGCCAGTTCAAGAAGTGTGGCGAATTAACCGCCTCCACAGATGGGCGACATTTTGGACTCAACTGCAGCCACTGCAGTGCAATATTTCCCTGGATAAAtatcaaagattttttaagACATCTGAACTCTCAGCATAAGAGTAAACTTAGTACAAATGGTGCGCAGGATCTGGAGCAAAATcaacagccacaacaacaacaacatcaacaggaGAATGTAATAATTAGTCTAACATCTTTCCCACTGTCGACAAAAACCAATGCCGAATGCGCTGATGATAGCATCAAGGAAGATCCACTTGAGACTGCAGACGAAGAAGCTAaagacaaagaagaagaatatgaATGCGTATCAGAAGACTACTTGCAGGAGGAAGATTTTGAAGGCTTTTGTGAAGAGGATGTGgatTTTAAAGAAGCTGAAGAAGTTGTGCAGTGTACTAATGAATCGGTGAATGATGAAGCAGTCTCGGAAACGTATTTCAAGagTAGCTCAAGCAGCTCTGAAAATGAAGATGaacatttttgtgatttaaaacTTGACTTGCAATCGCATGAAAATCGTGAAGTCCTGAGCTACATCAttgaaatacacaaaaaaaattccatactTTGGGACAAAGAGCACCCGTTCTATCATCGTctcaaaaaaatggaaatatatCGGGAAATGTGTCGCGAGATTTTAGCGCGGTTCAGAAAAATACTAACAACCACGAGCATAATcaagatttttgcaaaattacgCAGACTCTACACCGATGAATTGCTATGTAGTAGCGAGGAACAACGACCGCAGATACCCACAAAACTGTGGTGCTTCGAACAGTTAGATTTTCTCAGAGCGAGAGAACTTGCAGACAATGCTACGTTAGTGTTGTCCATCGATCAGTTAATTCCGTTGGCCGAAATATATAAGCTGCATCCGGTGCTTTGGGATTTGGACTGCGATGAGTGTCACAATCGATTGCTACAGAAGAGAGAAACACAACAAATGTTGCAAGAAGTCAACGAGCAGATGGGTTTAAATATGACGCTCAAGAAAATGCGTACACGCATCACACGCATGCGCAGGCACATACGACTAGAACAACAGAAACGATTGCAATGCGAACAAAACAACGAAGAATTTAAGCCATCTCATGAGGAGCTCTACGAAAAGCTGAAATATCTCGAGCCCTTCATAGGGCCGTTTCGTTGCGACGAATGCAACGAAGAGATCGTACAGTATCATTTGTTCAAGGCACACAAGGCCGCACACAAGGGCCGACTGCCGCATACGTGTAAATTCTGTGGAAAggatttcaaattgttttgtaactTGGTAACCCATCAGCGACGACATACCGGCGAAAAGCCATTTGCGTGCTCGTATTGTGACATGAGCTTTGCCGCTCCCGGCGATCTAAAAATTCACACAAGACTGCACACTAACGAAAGACCCTACATTTGTCACGTTTGCGGCATGGCGTTTACCACTAGCAACAAATTGTCCAAGCACAAAGCTGTACATGAACCCGAAGATATACGCCCGCGCTTCCAGTGTCCGCATTGTCCAAAGAAATATGTTGCAAAAGTATCTCTAAAAACGCACATAAATTCACATTTAAACGAGCGCAACTTTATGTGCCCCGAGTGCGGAAAGGGCTTCTTTGGGCGCAAGACTTTGCGGCAGCATATGAATCTGCACGATAAAGTGCTTCGATATGAATGCGATTTATGCAAGAAGAAATTTGCACAAAAGGCGGGCCTATGTTCGCACCGACGCGCGCATCATAAAATTGTGGGCACTAGTAAAAGTATGATTGAAAAACCTTAG
Protein Sequence: MCTITENHPRWSLYAKLRKCGEITASNDGRHFGLNCTHCLTIFPWIEIKEFIEHLHKQHASFFCTTEQQQQKQPNDKIKYFIQASEPLQTNIVSVGADDDSFKEDPLDSTDEETRDSAKGEEEEEDAYVSEEDLQEELFEGFCEEDEDIKEAEEILKCTIESMNDEVASVTHSKSNSSCSDNENILELDLESHGNRQVLSYIIKIHQENSILWDSEHPCYEQRKKFEIYREMIREILARFKKTLTTKEIRATFAKLRKLYTDELLCGNEEQRSQIPTKLWCLEQLDFLRARELADNATLVLPIDQLIPLAEIYKLHPVLWDLDCDDCHNRMLQKTEQQQVLQEVNQQMGLNMSLKHMRLQIVRLRRYIRLEKQKRLECEQTNEEFEPSHDELYEKLQYLEPFIGPFRCHECNEEIVQYHVFKAHVAAHEGRLPYTCSYCEKGFKLFCNFQTHVRRHTGEKPFPCVYCDMSFAASGDLKIHTRLHTNEKPYICHFCGMAFSTNNKLYKHKAVHDRVRIHKRYECTHCPKTYSSKESLNVHINSHLKIRSAVCPECGKGFFGRKTLRQHMNLHDKVKRQFKKCGELTASTDGRHFGLNCSHCSAIFPWINIKDFLRHLNSQHKSKLSTNGAQDLEQNQQPQQQQHQQENVIISLTSFPLSTKTNAECADDSIKEDPLETADEEAKDKEEEYECVSEDYLQEEDFEGFCEEDVDFKEAEEVVQCTNESVNDEAVSETYFKSSSSSSENEDEHFCDLKLDLQSHENREVLSYIIEIHKKNSILWDKEHPFYHRLKKMEIYREMCREILARFRKILTTTSIIKIFAKLRRLYTDELLCSSEEQRPQIPTKLWCFEQLDFLRARELADNATLVLSIDQLIPLAEIYKLHPVLWDLDCDECHNRLLQKRETQQMLQEVNEQMGLNMTLKKMRTRITRMRRHIRLEQQKRLQCEQNNEEFKPSHEELYEKLKYLEPFIGPFRCDECNEEIVQYHLFKAHKAAHKGRLPHTCKFCGKDFKLFCNLVTHQRRHTGEKPFACSYCDMSFAAPGDLKIHTRLHTNERPYICHVCGMAFTTSNKLSKHKAVHEPEDIRPRFQCPHCPKKYVAKVSLKTHINSHLNERNFMCPECGKGFFGRKTLRQHMNLHDKVLRYECDLCKKKFAQKAGLCSHRRAHHKIVGTSKSMIEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -