Svar022046.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:43209760-43212891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2e-05 0.0014 19.3 1.5 2 23 338 359 337 359 0.97 2 15 0.0013 0.093 13.6 1.8 3 23 367 387 365 387 0.97 3 15 0.0055 0.39 11.7 0.5 1 23 393 416 393 416 0.97 4 15 7.8e-06 0.00056 20.6 2.6 1 23 439 462 439 462 0.97 5 15 0.0029 0.2 12.6 0.4 2 23 535 556 534 556 0.95 6 15 8.6e-06 0.00061 20.5 1.2 1 23 562 584 562 584 0.99 7 15 4.3e-07 3.1e-05 24.6 0.9 2 23 656 677 655 677 0.97 8 15 0.00029 0.021 15.7 3.1 1 23 683 705 683 705 0.97 9 15 0.00036 0.025 15.4 0.1 1 23 711 734 711 734 0.97 10 15 0.00086 0.061 14.2 2.6 1 23 743 766 743 766 0.95 11 15 0.0046 0.33 11.9 0.2 1 23 783 805 783 805 0.95 12 15 0.27 19 6.4 1.2 1 23 811 833 811 833 0.92 13 15 0.88 63 4.8 0.1 2 23 870 892 869 892 0.93 14 15 0.57 41 5.3 0.7 1 23 897 920 897 920 0.90 15 15 0.16 12 7.1 0.1 3 20 927 944 926 947 0.92
Sequence Information
- Coding Sequence
- atggCAAAGTCAAAGTCGAAACGGTTGCTGCGGACGGCTGTCACTGCGTCAGCTTCTCCACAGCAAAAGCAGCCACCAGAAACAGATCGAAACCAAGAACCACAACATAAGTTTAAATCTAATGCCACCGCATCAGCTTCGGCGAGCATAACCATGACCAGTGGTGAACTTCTTTTGGACGAGAGCGTCTGTCGTGTATGCTTGCATTCTGCCGGTACTGTGTCGTTATTCGATGGTTGCGGCGCCGACGAACAATATCGCTTTTGTACACTTTTAGAGGCAAACGAGCATGATGGACTGCCCGGCCACTTGTGTACAGTTTGTGCGGATCACATGCGAATTGCTTATGATTTTCGGTTTCAAGCAAAATATGCAGAAGAGTATTTTCGCAAGACGAATCTAAATCGTGTTACACCATTGTCGATGACGAAAacgaaacacaacaacaacgatgacgAGTTGGATGTACAGGGATTAATAGTCAACGGATACGATAACGCGAACGCTATTAAGTCACCAGAACAGGTGCTGGAGGAGCAGGTGCTAGAAATTGATAAACTGATGCttgcacaaaacaaaagcggTGTTGACACCGCATTAGAGTTGGCTAATACGATTACAATTGATGTGTTTGTTGATAAGGAGAACACCAGAGCTGGCGAAAATGAGGAGAACGAAGACATGTTTATAAAAGATTCTTTGGATCAAGACAGCAGCGATGACGCCCTCAGTGATCATTTTGCAGAGGCATTCGAAGCTACAGATGTCGAAAAAACTATCAGTCCCAAAAAATtggaagtaaataaaaacaattacgaGTATGAAGATACTACTTTACCAGAAACGAAACGCTCACATAACAATGCATTCCAACCAGCGTCAATTACTGCTGCCGATACCTCAGAATCAATTCTAAATGTCAGCGCTGTCATTACACAAATTCTTGAAACATCGCGCGaagaaaatgataaattactaacaaaagtaaaagagCGAAAAAATGGCAAAGTCGAGTGCAATATTTGCGGAACTACATTCACGCACATCAATTCGCTGCGCCAGCATCTGATGAAGCATTCGGGCGAGCGTCCATTCGGCTGCGATTTCTGCGATAAAACATTTACGCGTCGCACTATACTCAAGATTCATAGGCGACTTCACACTGGCGATCGGCCATATAGCTGCGACGAGTGTATTAGCACCTTTGTCACTAAGGAAGCGTTAAATCGACACAAGCAACGTGAACACAAAGATGAAGCAGACGAAGCAGAATCGATTGTCGCCACCAAGACCGCCTCGTCCACCAAACCAAAATTCAACTGCAAAATTTGCCAGAAAACACGGTCCTCCAGATATTCCCTTCAAGCACATATGCGCACTTACCACCAAGCTGAtttcaaagaagaagaagaagagaccGAAGAACAGCAACACTCCAAAAAGCCGtctaaaagaataaataataagCCCTCACCACCATCATCGAATAGTGGTAAAACGGATAAGGAAAGTAGTCGTGGACACGAAAAGCGAGCTATCGACAAACCGCGATTGCCGCGACGCATGCTCGACGAAAATGGCAAACCGTTGCCAACCGTCAAATATTGCAAAGTGTGTCATCTTGGCTTCCCCAGTAAATGGGCGTTATTTGCACATCAAGAAGCGCACGAAATGATCCAACTGTATGAATGTGACATCTGCAAACGTGCCTTCGAAAAGAAATATAACTTGCTCTATCACCTGCAAACGCACGAAAATGCTGAAGAGCTTATCCAAAAGTATATTAAACAAGATTCGAATAAAAAAGTATCATCGAAGGCGGCGACGGCTAGCGATGACGACGAAGATAACCTCCCGCTGGCGCAACGTATTAGTCGAGCGGCACATACGAAAATCCTTAAAAATATCGACAAGCGCAAGTGCCATACACCATATGAGAAGCGCAAACAGTTAAACAATGAGATTAAGTGTCTCGTCTGCAATAAGAGTTTTACCACTTCTGGCTCGCTAAAGGTCCATCTGCGTACGCACTCGGGCGATCGCCCTTTTGCCTGCGAGCATTGCGGTAAACGTTTTACGCGCAACAACATATTAAGAATTCACAAGCGTCAGCATACGGGCGATAGGCCGTTTAAGTGCCCGCTCTGTCCGGAGGCATCCATTACAAAAGTTGCTTTAATGCGCCACGTTCGCAATTTCCATGAAAACGGCGGTATAGATTTTCCCCACTGCTGTGAGATCTGctttaaaacatttccaaaTAAAGATTTGTTAGCTGAGCACGAACAGAAGGAGCATGCGGTTAACGAACCAATTAATGCTGTTGGTGTTATTACAAAGCGAACATTCATTTGCAAATTGTGCTCTCAGGAATTTATAACATGGAACGAATACTCAAATCACATTGATGCACATGATGTGCCTAAACCATTCCAGTGTGGCATATGTGAAATGCGTTTTGATAAGAAATTTAGGTTGCTCTTTCATCTGGAGACACACAAGTCGCGAAAGAATTGTATATGCAAGCACTGTGGCGAATCGATGACCAAaaatgacCGGCCGTGGCACATCAAACGCGAACATTTCGATAAGCGCCATCTGGATACGCCCTGCCCCGAATGCCTCGAAATGTTGTTTGACGTTGTTGACCTCAAACAACATCTTAACGAAAAACATGACTTTAAAGACTTCAATTGCGACAATTGCGGCATCAACTTTCTCACATTCGTTGAATTTGAGAAGCATTTTAACGCGCAACATAACAGCGTCAGCAAGGCCTGCCTCGAGTGTGGTGAGCTTTTCGACTCGCGAAAGGCATACAACCGTCATGTTTGGATGCACtatgtttaa
- Protein Sequence
- MAKSKSKRLLRTAVTASASPQQKQPPETDRNQEPQHKFKSNATASASASITMTSGELLLDESVCRVCLHSAGTVSLFDGCGADEQYRFCTLLEANEHDGLPGHLCTVCADHMRIAYDFRFQAKYAEEYFRKTNLNRVTPLSMTKTKHNNNDDELDVQGLIVNGYDNANAIKSPEQVLEEQVLEIDKLMLAQNKSGVDTALELANTITIDVFVDKENTRAGENEENEDMFIKDSLDQDSSDDALSDHFAEAFEATDVEKTISPKKLEVNKNNYEYEDTTLPETKRSHNNAFQPASITAADTSESILNVSAVITQILETSREENDKLLTKVKERKNGKVECNICGTTFTHINSLRQHLMKHSGERPFGCDFCDKTFTRRTILKIHRRLHTGDRPYSCDECISTFVTKEALNRHKQREHKDEADEAESIVATKTASSTKPKFNCKICQKTRSSRYSLQAHMRTYHQADFKEEEEETEEQQHSKKPSKRINNKPSPPSSNSGKTDKESSRGHEKRAIDKPRLPRRMLDENGKPLPTVKYCKVCHLGFPSKWALFAHQEAHEMIQLYECDICKRAFEKKYNLLYHLQTHENAEELIQKYIKQDSNKKVSSKAATASDDDEDNLPLAQRISRAAHTKILKNIDKRKCHTPYEKRKQLNNEIKCLVCNKSFTTSGSLKVHLRTHSGDRPFACEHCGKRFTRNNILRIHKRQHTGDRPFKCPLCPEASITKVALMRHVRNFHENGGIDFPHCCEICFKTFPNKDLLAEHEQKEHAVNEPINAVGVITKRTFICKLCSQEFITWNEYSNHIDAHDVPKPFQCGICEMRFDKKFRLLFHLETHKSRKNCICKHCGESMTKNDRPWHIKREHFDKRHLDTPCPECLEMLFDVVDLKQHLNEKHDFKDFNCDNCGINFLTFVEFEKHFNAQHNSVSKACLECGELFDSRKAYNRHVWMHYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -