Svar019250.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:7297345-7300839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 0.17 12.9 1.0 1 23 120 143 120 143 0.96 2 13 0.01 0.72 10.9 0.2 2 23 149 171 148 171 0.93 3 13 1.8e-07 1.3e-05 25.8 2.7 2 23 181 203 180 203 0.96 4 13 0.00013 0.009 16.8 7.5 2 23 411 432 411 432 0.98 5 13 5.5e-07 3.9e-05 24.3 0.9 1 23 438 461 438 461 0.91 6 13 0.077 5.5 8.1 0.3 1 23 466 489 466 489 0.93 7 13 0.027 1.9 9.5 1.5 1 23 499 521 499 521 0.97 8 13 0.39 27 5.9 2.9 1 23 526 548 526 548 0.95 9 13 3.7e-05 0.0026 18.5 0.8 1 23 555 577 555 577 0.96 10 13 2.3e-06 0.00017 22.3 1.0 1 23 583 605 583 605 0.98 11 13 2.7e-07 1.9e-05 25.3 1.3 2 23 612 633 612 633 0.97 12 13 1.1e-06 7.8e-05 23.3 0.4 1 23 639 661 639 661 0.99 13 13 0.081 5.7 8.0 0.1 1 23 666 689 666 689 0.94
Sequence Information
- Coding Sequence
- ATGGATTTGGAGCGTCTCTGCCGCGTCTGTCTGCAGGCAAAGGCagatttattttcgttattcGATGAGTGCGAACCGAACTGTAGTGACCCATCCTCCTCATTTGCGACTAAAACAAATATGGCCGAAATTCTAACTGAATGTACTCGGCACAAAGTGGACCGCTTCGACGATCGTTTGCCGCATCAAATATGCGCCGAGTGTCTAGAAGCGGCTCGCGGCGCTTATCGGTTTAAGCGTCGCGTCGAAAAGTCATATCGCCAGCTAATGGATTGGCTTGGCAACGATGCCGACACAGATGAACCGGCGAAAGTAGACCAGCGTGAAATGTGGACACAAACGGAAAAGTTGAGTTTGCATCCGTGCGAAATGTGTCGCGAGAAGTTTTTCGATGCCATGGAATTGCGTCAACATCGCCAGATGGTACATAAAGATGCCGCCAAGAAGTGCAAAGTCTGTGCCATGGTCTTTAAGGATGTACGTGCACTTAAATCGCATCTGGCGTTGGAACACCCGAACGAGCTGCCAACGAACGAAATTCAGTGTCCGGTATGCAAGAAGACATTCTCACGGCGGGATCATATGCAGCGACATATGCGTAACATTCACAAGATGGGCGGACATGGattaaatatttcacttaaatCGGAAACTAGCGACGATGTAAAACCGGCCGACTCGACACACTTTCTGGTGTGTGCCGAAGAATCGGAATCGGAAGTGGAGGAAGCAGACGCCACGAACCCTATTTCGAGCGATGACGAGAAATACGGTTTGCATGAATTTTTTGATACAAAGATGACGATTAaagTTGAACCATTTGAAGTTGGCGCCAGTAGCAGCAAATACGGTACAGCAACGGATATAACGACAGAAATGCTAAatgttgattttgatttgaacgACGATAAGAAACCGAAAAAGGAGGCAAATAGCAATGATGACGACACTGATTCGGAGAGCAGTGGTGGACGCGACGATGACGATCCGAGAACGCATGACGATGACAacaacgatgacgatgatgacaaTAGTGACGCTACATCCGACGAtgggaaaataaaaacgagaGCAGTCAAACGCAAAGCAGCCGTTCAACGCAGTCCCCCGCGTACCAAGGTAAAAATCGAGCGCGTGGATGGTCTCGCAGGCATAGGTGGACGAGGCGTACCTGGTGCGAAACAAACGCGCGTACGTCGTCGCAAAGGCGAGGGCGAGAACGAAGAAAATCGTTGCGAACAATGTCAGCGCACATTTACACGCTACTGTCACCTGAAGCGGCATATGGCCACACATCTCGAGGAGAAACCGTACGCCTGCGAAGTATGCGGCAAGCGTTTTACACGCAGCGATCATCTGCGCAAGCACGTAACCGGTGTGCACGGAACGAAAGAGCACAAATGCGATGTATGCGGGCTCGAGCTGGGCACCAACAGCGAAGTGCTGAAGCATAAGGTCAAGGAGCACGGCGCCGATCcgaatgcaaacaaaaatttcgaatgtGAATTTTGCGCAAAGCGTTTCGGCACGTTCAAGTATTTAGGCAAGCATCGACTGTTGCACACGGATCGCGTTTACGCGTGCCGCCACTGCGATGAGACATTCCAGGAGCGTAAAATCTTTCGCGAGCACGAGAAGACCCACATCAAGGAGCAGCGCAACTTTTTGTGCAGCATTTGTGGTGATAGTTTCCAGCGCAACGAGTATTTGAAGATCCACATGCGCCGTCACACCGGCGAGAAGCCATACAAGTGCAAATTCTGCGGCAAAGGTTTTCCGCGCGCCACCGATCTCAACCAACATGAAAGATACCACACCGGGCACAAACCAAACGTTTGTACGCTCTGCGGCAAGGCATTCCATCGCGCGTACAATCTGACCATACACATGCGCACCCACACCGGTGAACGCCCCTTCAAATGCGATCAGTGCCCAAAAAGTTTCGCCCAAGGCAATGACCTCAAAGCGCACATACGACGCCATACAGGCGAACGGTACAAGTGCACCGAATGCGATGCTGGCTTTCTGCAGTTATACGCGATGCGTCAGCATGCGCTCAGCGCGCATGGCATCGAAATTGAACCGAAAACAGGGCGTCTACAAAAGTTTCCCACTCTCTTAAAAGAAGAAGTTACaccgcaacagcaacagcaacaacagcagcagcaacagttgttGGCTCCGCCACCGTTGCCATTGCCACCGACGCATACCGGCGTCGTACCGTTGCCATCGCAACTGATTGCCAATTATATGCTGCCAACGATGCAAACGATGCCGGTAGTTATTCAGGAAACAGCGCCGCCATCATCGCATGCCAGCATGGcaacttataaaaatgtttaa
- Protein Sequence
- MDLERLCRVCLQAKADLFSLFDECEPNCSDPSSSFATKTNMAEILTECTRHKVDRFDDRLPHQICAECLEAARGAYRFKRRVEKSYRQLMDWLGNDADTDEPAKVDQREMWTQTEKLSLHPCEMCREKFFDAMELRQHRQMVHKDAAKKCKVCAMVFKDVRALKSHLALEHPNELPTNEIQCPVCKKTFSRRDHMQRHMRNIHKMGGHGLNISLKSETSDDVKPADSTHFLVCAEESESEVEEADATNPISSDDEKYGLHEFFDTKMTIKVEPFEVGASSSKYGTATDITTEMLNVDFDLNDDKKPKKEANSNDDDTDSESSGGRDDDDPRTHDDDNNDDDDDNSDATSDDGKIKTRAVKRKAAVQRSPPRTKVKIERVDGLAGIGGRGVPGAKQTRVRRRKGEGENEENRCEQCQRTFTRYCHLKRHMATHLEEKPYACEVCGKRFTRSDHLRKHVTGVHGTKEHKCDVCGLELGTNSEVLKHKVKEHGADPNANKNFECEFCAKRFGTFKYLGKHRLLHTDRVYACRHCDETFQERKIFREHEKTHIKEQRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCKFCGKGFPRATDLNQHERYHTGHKPNVCTLCGKAFHRAYNLTIHMRTHTGERPFKCDQCPKSFAQGNDLKAHIRRHTGERYKCTECDAGFLQLYAMRQHALSAHGIEIEPKTGRLQKFPTLLKEEVTPQQQQQQQQQQQLLAPPPLPLPPTHTGVVPLPSQLIANYMLPTMQTMPVVIQETAPPSSHASMATYKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -