Svar007602.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Suillia variegata
Gene Symbol
-
Assembly
GCA_949127995.1
Location
OX421843.1:19121119-19132274[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7e-05 0.005 17.7 0.2 1 23 266 288 266 288 0.98
2 26 0.0031 0.22 12.5 3.5 1 23 294 316 294 316 0.99
3 26 0.011 0.75 10.8 1.3 1 23 439 462 439 462 0.95
4 26 0.47 33 5.6 0.9 1 21 499 519 499 520 0.95
5 26 6.8e-07 4.8e-05 24.0 1.8 2 23 540 561 540 561 0.98
6 26 0.00018 0.013 16.4 1.1 2 23 570 592 569 592 0.96
7 26 2.4 1.7e+02 3.4 1.1 2 23 601 627 600 627 0.88
8 26 0.076 5.4 8.1 6.6 1 23 674 697 674 697 0.98
9 26 1.4 1e+02 4.1 0.4 1 21 716 736 716 737 0.90
10 26 0.053 3.8 8.6 0.1 2 23 747 769 746 769 0.95
11 26 0.0002 0.014 16.2 0.3 2 23 785 806 784 806 0.97
12 26 1.8e-05 0.0013 19.5 3.4 1 23 813 835 813 835 0.98
13 26 3 2.1e+02 3.1 1.7 11 23 889 901 879 901 0.73
14 26 0.00026 0.018 15.9 1.2 1 23 1013 1036 1013 1036 0.96
15 26 0.036 2.5 9.1 0.2 1 20 1043 1062 1043 1064 0.95
16 26 0.014 0.99 10.4 0.8 1 23 1073 1096 1073 1096 0.97
17 26 0.00038 0.027 15.3 0.7 1 23 1112 1134 1112 1134 0.97
18 26 0.0017 0.12 13.3 6.7 1 23 1142 1164 1142 1164 0.98
19 26 0.055 3.9 8.5 0.0 2 21 1191 1210 1190 1211 0.94
20 26 0.0029 0.21 12.6 3.3 1 23 1259 1282 1259 1282 0.98
21 26 3.5e-05 0.0025 18.6 2.1 1 23 1385 1408 1385 1408 0.98
22 26 4.6e-05 0.0033 18.2 0.3 2 23 1446 1467 1445 1467 0.95
23 26 0.00099 0.07 14.0 2.2 1 23 1473 1495 1473 1495 0.99
24 26 3e-06 0.00022 21.9 3.4 1 23 1501 1523 1501 1523 0.98
25 26 9.3e-07 6.6e-05 23.6 2.4 1 23 1529 1551 1529 1551 0.99
26 26 0.0019 0.13 13.1 0.1 1 22 1557 1578 1557 1581 0.90

Sequence Information

Coding Sequence
ATGGCCCAATTAAAATGTCGCACGTGCTTCGAGATTTCCGCACATTTTTATCCACTCACAGATCCGTACGAGTCCGCCGATCGCACCCTCGCCGATTTGCTGATTTGTATTACTAAAATCGATGCAAAAGACAATGCCGAACACCTGCCGAATCACATTTGCGGCACCTGTTCGCGTAAGCTAAAAAACGCCTATTCATTTGTTCAGCAGGCTCAGCGTGTCAACAAGCAGCTACTTAAGGTTTTGCGTGATGAAGTGGCGGCAGCATCTTCGAAAGAATGCCTGCTTGAGGCGCCAATCGATATACCAGCGTCTggaatgcaaattaaaatggaGGCGGCTGAAATTGGCGAGGAGTGCTTGTACGATAATTTCTCGATAATGGAAATGCCGGTGGCGGTAGAGTGTGATGTCGCAGCAATGAGCAGCGGCGGCGAAGGTGGCAGCACCAGCAAAAGTAAACCGAAAATGGCAGGTGTGTCACTTAAAAAGGAGGACATGGAAGCGACAACTAGCAGCAACTCAGCAgCAAATGCCAATTTGGATCCAATAACAGTCGCCGCCACATTCTGGGACAATGATACGGACGatgacaacaacgacaatgaTTCGTTTAATATGATGGATCAGCACAATGATACCGATTCACCTTATGTAGAAGATAGCGATGCCGAATACCAACCGTCCAAGGTGAAGGTGAAGGCGAAACGTGGTCGAGGACGTCCAcgcacaaataaatacaaagcgTACGATGACATGAAGGCGACCGTTGGCGACACAAAAACCGCAGGACGTTACATTTGTGCCGAATGCGGAAAGACTTTCGCCTGGAAAAAGGATCTGCAACGTCATGCCAATACGCACTTTGCCGCGCCGCAATACCAATGCGAATATTGCGAGCGTAAATTCCTGCGAAAAGACAAATTCAACGATCACACGCGCTCACATTTGAAGCAAATGGGTCAACCGTCGCGACATACCGAATGGCTTTTTGCCGAGCGCCTTTATACCGCTGCACCGTTCCAGCTCATTCAGTGCAAACTTTGCGCGGACAGCAGCTTTCAAACGACTCAAGCGCTGCGCCAACACTTGCTGCAACTGCACACGGACCCAGCGACGCTACTACTGCAACCCGATAGTGAAGTTATGCGCGAACTGTTTCCGCAGACCACCAATTTGGATGATTTGCGCAAGAGTATTAGCGCCGATGTGGCGCAACAGCGTCTGGCACGCTACTACGCCGTTGTCAATCAGTTCGGTTACGAGATGTCGCTGAGTGATTCCGATGCAGATGCCGGTGATAAtgaacacaaatacaaatgtgaACTGTGTGCGGCAACTTTCAAGCGAAAACATGAAATATTTGCGCACACCAAAGCGGAACACGCCGATGCGACGCTACCGCACAAGTGCAACGTCTGCAAGTTGGAATTCGTTTGCGATGCAATGTTCGAGttgcacacacgcacgcagTGTCGCAGCAAGGAGAAGTTGTATCAGTGCCTCAAATGTCCAGGCAAATTCATGTGGTCGGAGAATCTGGAACGACATCAGTGCTCGAATCGTTTCAATACACCCGAATACAAgacGACTGTACTGAGTCAGAAGGATGTGCGCCAGTGCAACGTTTGTGACAAGACATTCGTGCGCAAAAAGGATCTGAAGCGTCACCTGGAAACACATGCGGCCGAAGCGCGCGATTCGCTCGAATGCGAAATCTGCTTACAGCGCTTCCGAAAGACACAAAACTTGCGGCAACACATGAAAACTGCTCacgaaacaattaaacaatgtCGCATCGAATGCCGCCTGTGTCCGGAACACGAAGCCAAAAGCTGTGACAAGCTGTCGCAGTTGCGTGCACATTTAAACGAGCAACACGCCAACGCGTCAAATGAGTTCGGTATGGAGTCGGATATGCGGCACTATTGTGCCGTCGATGCGAGCGGCAACGAGCTCGACCTGTACGATTCGGAAACGGATGATGAGACAACGAATCAAGCTGCCATGGCGGCCATTTATAAATGTGAGCTATGCGAACACACAACAAAGCGCCGCAAGCACATGCTGCAACATCAGCAGAGCACCCATGCTGTCGACAGCGGCGGAGGTGGCGGGGACAGTGACGAGCAAAAGCCGCTGCCGCATGTCTGTGCCGTATGTCAGAAACAGTTTGTCTGCGCCGAACTGTTGGCTCAACATCTCAGCCGTGACTGCTGTAATGCGGCAAAAACTTTGAGTTGCGAAAAGTGTCCGGCGCGTTTTGTGTGGCCCGAAAATCTGCAGCTGCACGTGCGACTGAAGCACATCGATCCTGAGCAGCGGATCAGTCGACAACTGGCGAATAAGCTGCAGTGCGACCAGTGCGATAAGGTTTTCATTTGGCCCAAGGATTTGACGCGTCACAAGCGCGTTCACATGCCCGAAGACGAAAAGTACGATTGTCCATTCTGCGATCGGAAATTCAATCGCAAGGACAACATGCATTCACACATGAAGGTGCATGGCAAGGGGGCAGCAGAGTCGCTGACGTCCGCGgtagataaaaagaaaaaagaaacacatgGTCGCATGAAACCGGGAAAGGTGAAAGGAATCGATGAGCATCTTTGCAAACCGCACGGCTGCAAACTAATTCAATGCATGATCTGTCTCTCGAAACATTCGAAAATTGCTGATTTGCGAACGCACATGCGCACCCATCAATACGTTGTCAACTTTGCGCAGCGTAACGACTCGATTGCGGACATTGCTACCATACTCTATCCGGAAGAAGAAGACACCAGCGGTCTAACGGAGGCGATGCTAAGCGCACGCATTATCGCCGATGTTACAGCGCAAAGGGTCGAACGTTTCTATTCGATCACCAACGAAGTGGGCTACGAGCTGTGCATGAACAGCTCCGAAACGGATAGCGATTCTGATGCGGCGGAAAACGCCGATGTCGATGCcgacaatgatgatgatgctgacgacgacgataatgatgatgaagaCGATAAGCCACTTAGCAAAATGCAATGCCGCCGACACGAGTACGAATGCGACGTGTGTCGTGCCAGCTTTAAtcgcaaatacaaattgtttgcgcATCAGGATCGCCAGCATGAATGGGACGAGGCTACGCATGTGTGCACGCACTGTGCGGCACGCTTTGTCAGCAAGACGTTGCTGAGCTGGCACCAAGCGGCACAGTGCAAAAATGTGCTAAAGCGTTACGCGTGTCGCAAGTGCCCGCTTAAGTTTATGTGGAAGGATAATCTTAAGATGCATTTGCGCATGCAGCATGCAGATGTTGACGAGAGCAAAAAGAAGtcGGAGCCATCGCGCATCTTCGAATGTGTACAGTGTAATCGGATCTTCCAAATGCAAAAAGACCTCACACGCCACATGGTCATGCATCAGAGTGGCGAAGCCTACAGCTTCAAGTGTCTTTGGTGTCCGCGCAAATTCTACCGAAAATACAATCTGCACATGCACATCCATCGACACGGTGTTAGGCCCGAACATCTCATTGCAGCGCGTTGTCTGATTAGTGCTACGAGTGGTCCGAACGGCGTCAAACAGGTTCAATGCAAAGTGTGCAATTTGCTGTTTCCCAGTGTCAGCGCATTGCGCGCCCATTTATTGCAAGCACCCGCCGCGCATCACCAGTTCAGCTCAGCGCTGAATTATTCGATTACGAATGCGCTGGGCTTTGAGCTGCAAATCGACGACTCGGAAACGGAAACAGAAGTGGAAGTTAAAAAGGAAGCAACTGCAACTGTTAATGCATATCGCTGCGAAATGTGTAATCTGACGTGTCGCCGTAAATTCGAAGTCGCTCAGCATCAGCGCTCGATGCACAAGCACGAACTGTTGCCGCTTAAATGCGATAAGTGTATTTTTCGAACCGTTTCAAAGGAAATACTCGCGCATCATATGCGCACACAATGCTACAATCccgaaaaactatttcaatgcAAACGATGttgctttaaatatatgtGGCAGGAGAATCTCGAGATGCACATGCGATTGCAACACGCACAGGACGAGGAAGAGGAGGCGGCGGATATCGAAATGGAACCGAAAGCAGAGACTGCTGCCGCTGCAGAACAAGCGGCCGCAGCCAATGCAGCTTCCACGTGTCTGGCAACGGCCGAGAAAATATTCCAATGCGATAAATGCAATCGTAAATACAATCGCAAAGATCGCCTGACGGCACACATTAAAAAGGCGCACAACGACAACGCAGGCGCAATAGTTACAACCGGCAGCGGCGGCAATGATGCTTCGCAAATAGATCCCACCACTGGCGAGGTGCTTAAGAAGCCCCCACTCGAGCGAAAGTTTCTTTGTGCGTTCTGCGGCCGCGGTCTAACCTCTTCATCGAATTTAATTATACACATGCGCCGCCACACCGGTGAAAAACCGTTTAAATGCGAATTCTGCGATATGGGCTTTCCGCGTTCCTCCGATTTGGCGTGCCATCGACGCACCCATACCGGCGAAAAACCGCATCAGTGCACGGTGTGTTCGCGTGCCTTTTCGCGCTCCTACAAATTGCAGACACACATGCGTATCCATTCCGGCGAACGGCCGTACAAGTGCACCTATTGCGAAAAGTCCTTTACGCAGTCCAACGATCTGACTTTGCACGTGCGACGACATACGGgCGAACGTCCGTATGTGTGTGGCATCTGTGGAGAGCGTTTTATACAAGGCACAGCACTCAAGAATCATCGCACCATGCGTGGTCACTATGAAGACGAGGGACCGCGTCGATACGCCGGTATGCTGGAACAGTTTTAA
Protein Sequence
MAQLKCRTCFEISAHFYPLTDPYESADRTLADLLICITKIDAKDNAEHLPNHICGTCSRKLKNAYSFVQQAQRVNKQLLKVLRDEVAAASSKECLLEAPIDIPASGMQIKMEAAEIGEECLYDNFSIMEMPVAVECDVAAMSSGGEGGSTSKSKPKMAGVSLKKEDMEATTSSNSAANANLDPITVAATFWDNDTDDDNNDNDSFNMMDQHNDTDSPYVEDSDAEYQPSKVKVKAKRGRGRPRTNKYKAYDDMKATVGDTKTAGRYICAECGKTFAWKKDLQRHANTHFAAPQYQCEYCERKFLRKDKFNDHTRSHLKQMGQPSRHTEWLFAERLYTAAPFQLIQCKLCADSSFQTTQALRQHLLQLHTDPATLLLQPDSEVMRELFPQTTNLDDLRKSISADVAQQRLARYYAVVNQFGYEMSLSDSDADAGDNEHKYKCELCAATFKRKHEIFAHTKAEHADATLPHKCNVCKLEFVCDAMFELHTRTQCRSKEKLYQCLKCPGKFMWSENLERHQCSNRFNTPEYKTTVLSQKDVRQCNVCDKTFVRKKDLKRHLETHAAEARDSLECEICLQRFRKTQNLRQHMKTAHETIKQCRIECRLCPEHEAKSCDKLSQLRAHLNEQHANASNEFGMESDMRHYCAVDASGNELDLYDSETDDETTNQAAMAAIYKCELCEHTTKRRKHMLQHQQSTHAVDSGGGGGDSDEQKPLPHVCAVCQKQFVCAELLAQHLSRDCCNAAKTLSCEKCPARFVWPENLQLHVRLKHIDPEQRISRQLANKLQCDQCDKVFIWPKDLTRHKRVHMPEDEKYDCPFCDRKFNRKDNMHSHMKVHGKGAAESLTSAVDKKKKETHGRMKPGKVKGIDEHLCKPHGCKLIQCMICLSKHSKIADLRTHMRTHQYVVNFAQRNDSIADIATILYPEEEDTSGLTEAMLSARIIADVTAQRVERFYSITNEVGYELCMNSSETDSDSDAAENADVDADNDDDADDDDNDDEDDKPLSKMQCRRHEYECDVCRASFNRKYKLFAHQDRQHEWDEATHVCTHCAARFVSKTLLSWHQAAQCKNVLKRYACRKCPLKFMWKDNLKMHLRMQHADVDESKKKSEPSRIFECVQCNRIFQMQKDLTRHMVMHQSGEAYSFKCLWCPRKFYRKYNLHMHIHRHGVRPEHLIAARCLISATSGPNGVKQVQCKVCNLLFPSVSALRAHLLQAPAAHHQFSSALNYSITNALGFELQIDDSETETEVEVKKEATATVNAYRCEMCNLTCRRKFEVAQHQRSMHKHELLPLKCDKCIFRTVSKEILAHHMRTQCYNPEKLFQCKRCCFKYMWQENLEMHMRLQHAQDEEEEAADIEMEPKAETAAAAEQAAAANAASTCLATAEKIFQCDKCNRKYNRKDRLTAHIKKAHNDNAGAIVTTGSGGNDASQIDPTTGEVLKKPPLERKFLCAFCGRGLTSSSNLIIHMRRHTGEKPFKCEFCDMGFPRSSDLACHRRTHTGEKPHQCTVCSRAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDEGPRRYAGMLEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-