Svar018716.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:1458795-1463638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00024 0.017 16.0 0.7 1 23 325 348 325 348 0.97 2 19 3.6e-05 0.0025 18.6 1.8 1 23 363 386 363 386 0.96 3 19 0.00087 0.062 14.2 2.1 1 23 391 414 391 414 0.96 4 19 0.00019 0.013 16.3 1.8 1 23 422 444 422 444 0.98 5 19 0.00011 0.0079 17.0 0.6 3 23 450 470 448 470 0.95 6 19 1.8e-06 0.00013 22.7 0.7 1 23 476 498 476 498 0.98 7 19 0.0025 0.18 12.8 0.9 1 23 504 526 504 526 0.95 8 19 0.00027 0.019 15.8 3.6 1 23 532 554 532 554 0.99 9 19 3.4e-05 0.0024 18.6 1.6 1 23 560 582 560 582 0.99 10 19 0.0028 0.2 12.6 1.2 1 23 588 610 588 610 0.98 11 19 3.1e-06 0.00022 21.9 0.7 1 23 865 888 865 888 0.98 12 19 0.00013 0.0093 16.8 1.7 1 23 893 916 893 916 0.98 13 19 0.00056 0.04 14.8 5.6 1 23 946 968 946 968 0.97 14 19 1.4e-05 0.00099 19.9 0.9 1 23 974 996 974 996 0.95 15 19 0.0012 0.086 13.8 0.3 1 23 1002 1024 1002 1024 0.96 16 19 0.00051 0.036 14.9 1.4 1 23 1030 1052 1030 1052 0.96 17 19 0.0026 0.19 12.7 7.5 1 23 1058 1080 1058 1080 0.98 18 19 4.9e-06 0.00035 21.3 0.9 1 23 1086 1108 1086 1108 0.99 19 19 0.0097 0.69 10.9 0.1 1 23 1114 1136 1114 1136 0.97
Sequence Information
- Coding Sequence
- atggattttctttacgaaactgattttttgcgaatttgcCGAGTGTGCCTCTACATCACAGAGGAGGTGCAAGATATCGAAGTAGCTGCGCCTTTAAAAGCGAATCTGCAACTGCGGTCCATCTACAAATACCCGCCTGAAGAATGGAATTCGCAACAACAAATCGTGGAAGTGCTTAAAACCATTGTCCCACATctagaaataaacaaacctGAGAATACACCGCCACAAATGATATGTGAAAGCTGTCTGGAGCAATTGCATAAAACCTATCAATTCCAACAGATGTGCCTTAGCTCCGATCGTGGGATGCAGCAACTGCTGCAAAACTATTATGATGCAATGGATGTTAAATCTATCATTTCTACGGATGAGCTGGAAGAGGAAAATGAAGATAAATTGCCATCAGAGccagaagtagaagaagaggAGCAACTATTAAAGGCGGAATCACTAGTTGATAAATTGGAAGAAGagaataaatatgaaatggaATTAGAGCTGAAAGTGAAAGAAGCTGAACCACAGCTAGAAGTTGAGCGTTTGGTATTAGAAGATAATGAACAAGTGGTATATGTGGAACTGGTAGTAGAAAACAACCAGGAGTTGCAACACGATTTAAGTGAATATACAAAAGATAAACCTCGCGAAGATTCTGAATTTGAAGAAGTCCTAAAGCCATATGAGTTAGAAAACAGCGACAACAGTTTGGAAGAGATATTAGAATTCACTAATGAGGAAATGTTGGAGCAACAAACCAGTGACGATGTCTTCGAGACCACGATGAACGAGAAAGCAAAGGAGTCACATACGCGTCCCTTAagAAGTAAAAGTAAACGGCTAAAAgaatgcaaacaaaatgatTACTCTGTAACGCTGGAGATTAAAGAACACCATTCGGACGAAGATGAGGAGTGTGAATCAATTAATccgaataaaaaacaatgcGCACAGACCTACACACATTTTACTTATAAATGTGAGGAGTGTCGAATGACGTTTACTAAACGAAAGGCGCTCGATAATCACATAGCGAAAATTCACGATCTGCAAAACAAACCAGCATTGAATCCCACTCACGGGTCGTATAAATGCAGCAAATGTTGGATGACTTTTGCTCGTAAGCAAACACTCAGCAAACACATGTTGTTAAATCACAATCCAGAGCATTACAAGTGTGACGAATGCGGCAAGAGGTACGATTCTAAACGGGCTGTTCACGTACACAAACGCTGGTACCACTCGTCGAAAAGTGGGGAAAAACATGTCTGCGAACAGTGCAACAAAGCCTGCGACAATGCTTTACTTTTAAAGGCCCACATGCGCAGTCACAAATTAACGCATCTCTGCTCTGTGTGCGGCAAGGGTTTCGCCAATCCCTCTGTTTTGAAACAACATCTTTACCGACATGACGGCAAGATACGTTATGAGTGTCCAGAATGcccaaagaaattttcaaatcagcCCGATTTAAATGCCCACAAGCATATGCATAATAAACCAAAGACGCATGCCTGTGACCTTTGCGATGCCATATTTTCGTTTGCGTACCAACTAAAAATGCACTACATGTATCACGACAACGACAAACCATTCAAATGCGAAACCTGTGATAAGGGATTCATTACCGCAACTTACTTGCGCTGTCATATGCGGAGACACACCGGCGAAACACCGTACGAGTGCAAATATTGCGGTGATAAATTCGTTATGCAAATGCAACTGATGAAACATATGCGCAAGCATCTGGGGAATAATATTTATCGATGTGAACTGTGCCCACGTCGTTTTCGTTTGTCCAGTGAACGTCGTGTACATTTTATAACACATAAGGaaaatgagGAAGATATTAAAGTAGTGGCGACTTCCCATAAAGACATCAAATCGAATCGCCTGCTTCGATCCATCTACAATTGCCCGCCTCCAGATTGGGATTTAAATTTACAGGGTTCGTCACAACATATTGTGGAATTGTTAAAAAGCATTGTACCACAACTTCAAATACCCACAATGGACGCCACACTGCCTCAAATGATATGCGAATGTTGCCTCGCACAACTGCGACAAGCACATCAATTCCAGCAGATGTGCCTAAACGCTGATAGTCACATACAGCGTCTGTTGCAGTGTTACTATGATGCACAAGTAGTTAAATCTATGTTTTCAACTAGCTGCCGGTCAGTAGATGAAGATGAACTCGTGTTAGAGGATCCACTGGAAGCCCAACAAGAAGCAACAAACTATCTAAAATTGGAATTTGATGATGTGGAATCAATGCAGGAGACCTTGGCTAATGTTAAAGTGAAAATGGAAGCTAAACCAAGCGCTGATGTGCAGTTTAAAACGGATTTAAAGCCCAATGTGTTGACAGACGTTTGCCACGAAATGATAAAACAAATAATTAAAGCGCCCAAAAAAACACACAGCTCTAGTAGCTCATTTGCAGTTTTGGAAATAAAAGATGAAGAACAGAACTTATCGGCGTCAATGTCTAGCAGTAGTTGTGACAGTGACCAAAATAGTGGTGAGCGTTCTGCATTTAAAGATTTGCCCAACAAAAAGCTATTTGTAAGATCAAATAATCCCGAGGGCTATAAATGCGATGAGTGTCCGCGTCGCTTTGCCAAACAGGAATCGCTTAAAACACACATAGAGACCACACACGATCCAAATCAATATGAATGTGATTTGtgcggaaaaaaattcaagtggAAACGAACACTTGCCAAGCATCGTCGCCGATTGCACGCTGAGAGTAgagagcaacaaaaacagaaacaactcGAGGAAAAGGAAGCGCTAGCCGCCAACAAAGCAAATGACACTGCAAAGATGCATGTCTgcaaattttgcaacaaagGCTTCAATCAGTCGTGTACGCTAAAAGATCACCTTCGCATTCACACCGGTGAAAAACCATTTCTCTGCTCTGAATGCGGTCGCGGCTTTAACAGTTCAAGCAATATGAAGCAACATTTGTTGCGTCACTCCGGCGAGAAGCGCTACGAATGTCCCGATTGTCCGAAGAAATTTCCATGCCTCAGCGATTTGGCCTCACACAAAGCGGTGCACAATAAGTTGAAATCCCACATTTGTGATATTTGCGGCAAAGCATTTGACAAACcatttcaaataaagaaacacaaaatgtACCATAATGGCATAAAACCGCATAAGTGCGAGTACTGCGATATGAGATTCGTTTGCGCGGATCATATGCGCCGCCACATGCGTACCCACACTGGCGAAAAACCATATAAGTGCAAATACTGTGTACGCGCCTTCGCTCAAAGCAATGATCTGGTAAAGCATTTGCGTTCGCATCTTGGCGAGAATGTCTATCGTTGTGAGCTGTGTCCGAGTGGTTTTCGCCTGGCTGCAGAGCTACGCAAACATTTTGCGGTGCATAAAAGCGACGATGAGGCAACGCGTCTATCGAATTTGCAGTGTCTTATTGAAGAGGAGGCAAAACTAAGACTTAAAATTGGTGGACATGTCGGAAGTGACGGTAGCAGAGAGACACCTACAAGCACGGCAGTTGCCTAA
- Protein Sequence
- MDFLYETDFLRICRVCLYITEEVQDIEVAAPLKANLQLRSIYKYPPEEWNSQQQIVEVLKTIVPHLEINKPENTPPQMICESCLEQLHKTYQFQQMCLSSDRGMQQLLQNYYDAMDVKSIISTDELEEENEDKLPSEPEVEEEEQLLKAESLVDKLEEENKYEMELELKVKEAEPQLEVERLVLEDNEQVVYVELVVENNQELQHDLSEYTKDKPREDSEFEEVLKPYELENSDNSLEEILEFTNEEMLEQQTSDDVFETTMNEKAKESHTRPLRSKSKRLKECKQNDYSVTLEIKEHHSDEDEECESINPNKKQCAQTYTHFTYKCEECRMTFTKRKALDNHIAKIHDLQNKPALNPTHGSYKCSKCWMTFARKQTLSKHMLLNHNPEHYKCDECGKRYDSKRAVHVHKRWYHSSKSGEKHVCEQCNKACDNALLLKAHMRSHKLTHLCSVCGKGFANPSVLKQHLYRHDGKIRYECPECPKKFSNQPDLNAHKHMHNKPKTHACDLCDAIFSFAYQLKMHYMYHDNDKPFKCETCDKGFITATYLRCHMRRHTGETPYECKYCGDKFVMQMQLMKHMRKHLGNNIYRCELCPRRFRLSSERRVHFITHKENEEDIKVVATSHKDIKSNRLLRSIYNCPPPDWDLNLQGSSQHIVELLKSIVPQLQIPTMDATLPQMICECCLAQLRQAHQFQQMCLNADSHIQRLLQCYYDAQVVKSMFSTSCRSVDEDELVLEDPLEAQQEATNYLKLEFDDVESMQETLANVKVKMEAKPSADVQFKTDLKPNVLTDVCHEMIKQIIKAPKKTHSSSSSFAVLEIKDEEQNLSASMSSSSCDSDQNSGERSAFKDLPNKKLFVRSNNPEGYKCDECPRRFAKQESLKTHIETTHDPNQYECDLCGKKFKWKRTLAKHRRRLHAESREQQKQKQLEEKEALAANKANDTAKMHVCKFCNKGFNQSCTLKDHLRIHTGEKPFLCSECGRGFNSSSNMKQHLLRHSGEKRYECPDCPKKFPCLSDLASHKAVHNKLKSHICDICGKAFDKPFQIKKHKMYHNGIKPHKCEYCDMRFVCADHMRRHMRTHTGEKPYKCKYCVRAFAQSNDLVKHLRSHLGENVYRCELCPSGFRLAAELRKHFAVHKSDDEATRLSNLQCLIEEEAKLRLKIGGHVGSDGSRETPTSTAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -