Svar019041.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:4893456-4894925[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-11 9.2e-08 32.1 0.0 4 44 13 54 10 55 0.88 2 2 0.34 6.5e+02 0.6 0.0 12 22 128 138 125 139 0.76
Sequence Information
- Coding Sequence
- atgtctaccACCAGCGGTCGCAGTTATAGCGAGCTGGACTTTAAAGCTGCCTACCGTGCCATCACCATCGACAAAATGTCGGTGCACAAAGCCTCgaccaaatttaatatacccCGCAGCACGCTCAGAACTCGCATTCATAAAGGCCAATTCGAGAAACAGCGCCAGGGACCGAGCACCGTCTTAACCGACGCAGAAGAACTGCGTCTGGAGCAATGGATTATCTACTGCTGGCAGACCGGCTTTACCGGCTGCCGCGAAAAGTTAATAAGCGCGACGGCCCGTACGCTACTCCTCCAAAGCGGTCGCATAGCGCGTTTTGGCCATTTTCGGCGACGTTGGTTCGCCACCTACTACAAGCGACATCCGCGTGTACGCGAGGTAATTACAAACGGCACGTCCGTACAAAAGGCAAACTGGAATTTAAATGTCGCACAGTTGGGCGATTGGTTCGAGCGCGTCGAGTCTTATCTAACGGCAGCGGATTTGTCGGAGGCGCTATGTCAGCCGGCGCGCATATTCCACTGCAATCGCGTGCAATGGCATATGCACGCCGGCGTAATCTTATCGTATGGCGCCGATGGACGCGCAACACCGCCGCTGCTGATTTTACCGAAAAAACTCGACGCAGCAGTTTTGCCAAAGGGTTGGGCTGAGCTCCCGCAAAGCGATGCCAGCGCCGATGCCAAAGCGTTGGAATTCTATTTGGAGCATGTGCTGCACCCCTTTCTGAAACATGCGCGCGTAAAGTTTCCAATAGTACTCTTTCAAGACCAGCAAAAAGAGGCACCGTCGTTTGCGCTCTATGAAAAGTGCCAAACGCTGGGCATCATTCTGGTCAATTTGTATTATCAGGCCTTTCGGCATTTGCGCCAAAGCTGGCAGCAACCGCTGCATGCGTGGCATAAGAATACGCTCGAAAATGTGTCCGAAGTGAAACAGCAGTCTGGAGTCACCTTCATCGAGACGCTTAAAGAGTGCTTAGTCTTTAAGCTAACAAAGTCCTGTATTAAGGAGGAGTTTGAAAGCTCTGGCATCTTTCCATTTCGTATAACCAGTGTCGATACTAGCTGTCTGGTACAGAATATGGCAACGCCGCTCAAACACGACTGCTTGCCAACTGCGGAAAATGCAGCAGTCGCATTGGCCGATAATTTTTCCAATTCTTCTGCTTCGTCACCCAGACACGATGACGATGCGAAGTTGGTCATTTCGCAGCCGTATACGCTTTCCCTTGATTATGAAGAATTCAAGCGTATTGTGGGTCCAGTGCAACTGTTACACCTGCAGGAGTTCGATGCGCTTGCGCCAAATAACGCGGATAATTATTCACCTGAATTTTTGGCCCTTCAACGAATTTACGCGAAACTGAGCTCAACGGAAAATGtaccaaaatgtaaaaatgttacaCTTGAAGAGGAACACTTGGACTTGGATGGCTATGAGGAGCATTCATTAGAGCAGTCCTAG
- Protein Sequence
- MSTTSGRSYSELDFKAAYRAITIDKMSVHKASTKFNIPRSTLRTRIHKGQFEKQRQGPSTVLTDAEELRLEQWIIYCWQTGFTGCREKLISATARTLLLQSGRIARFGHFRRRWFATYYKRHPRVREVITNGTSVQKANWNLNVAQLGDWFERVESYLTAADLSEALCQPARIFHCNRVQWHMHAGVILSYGADGRATPPLLILPKKLDAAVLPKGWAELPQSDASADAKALEFYLEHVLHPFLKHARVKFPIVLFQDQQKEAPSFALYEKCQTLGIILVNLYYQAFRHLRQSWQQPLHAWHKNTLENVSEVKQQSGVTFIETLKECLVFKLTKSCIKEEFESSGIFPFRITSVDTSCLVQNMATPLKHDCLPTAENAAVALADNFSNSSASSPRHDDDAKLVISQPYTLSLDYEEFKRIVGPVQLLHLQEFDALAPNNADNYSPEFLALQRIYAKLSSTENVPKCKNVTLEEEHLDLDGYEEHSLEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -