Svar001297.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- bab2
- Assembly
- GCA_949127995.1
- Location
- OX421842.1:16450237-16452868[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-12 4.3e-09 36.4 0.0 1 45 464 508 464 508 0.94 2 2 6 1.1e+04 -3.4 0.4 4 18 610 625 610 626 0.80
Sequence Information
- Coding Sequence
- ATGGGCGGTCCACCAATATCGTCGTTGCCACCCACTGCACCAGAGGGTCAAAGATACTGTTTGCGATGGAACAATCACAAATCGAATCTGGTCGAAATACTCGACGACCTCATCAAAAAATCGAGCTATGTCGACTGTACAATTGTCGTTGATGATGCACAGTTTAAGGCACATCGCGTCGTGCTCGCCGTCAATTCGCCATATTTCCGGTCGATACTACCGGACGTGCCGATGGATCATTGTAGCATCATTTTTCCCGGCGTCAAGGCTTTTGAAATGCGAGCTTTGCTCGAGTACATGTACACGGGCGAGGTAGAAGTCACACAATCGCAAATACCGAAGGTCATGCGCATTGCCGAGGAGCTCGAGGTGAAAGGACTTTTTGATTTGGCTGATCTTAAGGAGAAGTTTAACAAACAAAGTGATGAACATGCCGAACGTGCCGGTAATCCGTATGCCAGCTCATCGATGTCTTCAGCACCATATTCCACAGCAGCCACATCATCTTCACCATCCGCGGCCTCAGCTGCGGCTACGTCTGCGTCGAATCTGCAAAATGGCATCAAGGATTACCATAGCCCGCCAGTGCACGCCGCATCGGAAACTCAAACTGCCGCTCAGCACAaccatcaacagcagcaacaacagcaacagccacACCACCACCATAATTCCTCGTCAGTGATCTCAACCTCATCAAACATTTCGCCATCAGCTGCGCCGACCAGTAGCTCATCACCGCCTTACAGCACCTACAAATCACCTTATTCAAATCTCTACAATAAATCGCCGCCTGCAAGTATCGCTGCACAGACTTCAACCTCCAGTACAGCAACAGCCGCAACACTAGCGACTTCGAACGCAGCGACACTAGTGCCACAGACCGCAACAGAACGTACCCAACAATGGCCGTTGTCGCCTTcggctgccgctgctgccgccatGTTAAGTTCCGTTTATGAGTCGGCTCCTGATATGAATCCGCTTAAGCGCAAGAAGCTCTCTTCAATCTCCAGTATGCTAATGCAGCGAGATACGCCAATTTTGCGCAATGTCTTGGCTCAGGCTAATCCCGCAGATTCTTCGTTGCCGCTACTGTTGCCCGGTGCGACAGAAGGTAGCGCTAGCAAGAGTGAGAAGTCTGCACCGACTACCGCTTCGGCAGAGAAGAACTCGTCGTTGGTAGGAGCTAacgcacacaacaacaaccacagtTTCAATGGATCCGACTATAGCAGTGATAAGAAATACCACGACGAACCGCACTCACCCTACACAGATCGTTCCTTTGACGACGATGGCGCCTTTGATCCCAAAGGCAATTTTACTGGCAATTTTGGCTCGAGTGCAGCCAATCAAAAACCCGAATGGAAACGTTACAAGCAATACACACGCACCGACATCATGTCGGCGATACAATGCGTCCGCGAAGGCATGTCTGCGCTTCAAGCTTCTCGAAAATTTGGAGTACCATCGCGCACTCTATACGACAAAGTCAAGAAACTGGGAATTACTACAGGTCGCCCCATGAATCGCACCATGAAGCGCAGCCCAAGCAGTGTTGAGTCCTCTGCCGCATTTCCTTACGCGCATGGCTATGGACAATCCGAACCGTTGATGTCGTCCATGCACGAAGGTCGCAGCGGCGCCGGCGGCAACGTTGGCGATGAACGCGATCCTAAAGATCCGCGCGACCTTCTTCATCACCATATGCCACCTACAATACCACATTCAGCCGCAGCACTGCTCGATCATGCATTCTTGCAACAGGCGCTCGAATCGAATCGTGGCGGCGAAATTGCCGGACGTGAAGCGCTGCACGCAATGGCGCTGGCCGCTGCAGCACATGCTGCTGCAAATCAACAACGCCTATCCACAACAAGTCCTGGACCAAATGGTGGTGCACCACCGCCGGGCGCAGCACGTTCGCCCAGTCCCAGCGCATTTTCGCTTAAATATTCGCGTCCGAGCGAACACGAACTTTTAATGGCCGCAGCTGAACGAGAAAGGGAACATCGTATGATGATTGAAAACGAAATCGAAATGGAACGTGAACGCGAACGCGAACGAGAACGTGAGCGTGAAGTGGAAATGGACAGAGATCATCGTAATCGTGATCGCGAATTAAATGATGcctgcgacgacgacgacgacgatgaagatGATCATGTAGAGGACTTGTCAGTGACGCGCAAGGATTGTGTATCGCCATCAGATGCGGCAAGGCGGCCAGAATCGCCATACTCACCACCTCCTCCGTCGACAATGCTACCACCACCAACAGCTGCAGCAAGTGGCAATTCAAAGAGCAGTAGTAGTGGCGTCATCATGCCACCCATCAGCAGTTCACACACAATGCGATCTGCAGCGCATAGTAGTCGTCGCAGCAGTAGCGGCAGTGCTAGTGGCGATGACGATGAGTTTATAAGCGCTGCTTCAATGAAGCGGGAACTGATTATAGACGAAGCACGCGCCGACTGA
- Protein Sequence
- MGGPPISSLPPTAPEGQRYCLRWNNHKSNLVEILDDLIKKSSYVDCTIVVDDAQFKAHRVVLAVNSPYFRSILPDVPMDHCSIIFPGVKAFEMRALLEYMYTGEVEVTQSQIPKVMRIAEELEVKGLFDLADLKEKFNKQSDEHAERAGNPYASSSMSSAPYSTAATSSSPSAASAAATSASNLQNGIKDYHSPPVHAASETQTAAQHNHQQQQQQQQPHHHHNSSSVISTSSNISPSAAPTSSSSPPYSTYKSPYSNLYNKSPPASIAAQTSTSSTATAATLATSNAATLVPQTATERTQQWPLSPSAAAAAAMLSSVYESAPDMNPLKRKKLSSISSMLMQRDTPILRNVLAQANPADSSLPLLLPGATEGSASKSEKSAPTTASAEKNSSLVGANAHNNNHSFNGSDYSSDKKYHDEPHSPYTDRSFDDDGAFDPKGNFTGNFGSSAANQKPEWKRYKQYTRTDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQSEPLMSSMHEGRSGAGGNVGDERDPKDPRDLLHHHMPPTIPHSAAALLDHAFLQQALESNRGGEIAGREALHAMALAAAAHAAANQQRLSTTSPGPNGGAPPPGAARSPSPSAFSLKYSRPSEHELLMAAAEREREHRMMIENEIEMEREREREREREREVEMDRDHRNRDRELNDACDDDDDDEDDHVEDLSVTRKDCVSPSDAARRPESPYSPPPPSTMLPPPTAAASGNSKSSSSGVIMPPISSSHTMRSAAHSSRRSSSGSASGDDDEFISAASMKRELIIDEARAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01378487;
- 90% Identity
- iTF_01378487;
- 80% Identity
- iTF_01378487;