Svar017528.2
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- bab1
- Assembly
- GCA_949127995.1
- Location
- OX421845.1:33341129-33343226[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-17 3e-14 52.9 0.0 1 43 55 98 55 100 0.95 2 3 2.9 5.5e+03 -2.4 4.8 3 24 201 225 199 227 0.84 3 3 1.7 3.1e+03 -1.6 0.0 15 28 290 304 286 307 0.78
Sequence Information
- Coding Sequence
- ATGCTGGAGAACTCACACGCTTGGATGGGCGCCTCGAGCTCCTCGATTGCAGCAGACAGCTACCAATACCAGCTGCAGTCGATGTGGCAGAAATGCTGGAATACCAATCAGAATCTCATGCATCATTTGCGCTTCCGAGAACGTGGCCCACTTAAATCGTGGCGACCCGAAACTATGGCCGAAGCCATTTTCAGCGTACTCAAAGAGGGTCTCTCGCTATCGCAGGCCGCACGCAAATACGACATACCCTATCCGACTTTTGTGCTCTACGCGAATCGTGTGCACAACATGCTGGGTCCGTCTATTGATGGCGGACCCGATTTGCGACCCAAGGGACGCGGACGACCACAGCGCATATTGCTGGGCATTTGGCCCGATGAGCATATCAAGGGCGTTATCAAGACGGTGGTTTTTCGCGATGCCAAAGACATTAAGGATGATGGGATGGCAGCACATTTGCCACCCTACGGCCGGCATTCGcccatttttccatttcagGATGTTGTCTCGGGACCATCGCCGCTCAATTATCCTGTTGGACCGCCCGTTGGTCCATGTCCGAACGGCATACCCACACCGACGGGCGATCAAATGTCGCAAGAAGCAACGGCCGCTGCTGTGGCCGCAGTTGCTCACAACATACGTCAGCAAATGCAAATGGCACAGGCAGCGGcacagcatcagcatcagcatgCCGCTGAAAGTGCATCGCCGAATATCTTTAATTTGCCGCCACATCTACAGCCGCATTTGGCTGCTGCAGCGGCCGCAGCAgctgttggtggtggtggcggtggacCTGGAGGTGGTGGTATACCACTGCCTAAGGCCAGCATTTCGCCGGCACTGAGTTCTACTTCGCAGCCTGGTGCGTTGTTAAGTGCGCGACATGCCGCATCCCCGTGCGGTCTGCCGCCCAGTATGGCTGCACAGGTGGCAGCACTGCATATGgccggtggtggtggcggtccCGGCGGTCCAGTGGGATCCGCACCACATCCCGCATTACTGagtcagcagcaacaacatcaactacaacaattgcatttgcaacagcaacatgcactgcatcaacagcagcagcaacaattgcatcagcaacagcaacactcGTCCGCACTTGTCGGCTTCGGTGCTAGTTCCATGTCGCATCCGTCGGTTTCCggtgcagcggcagcagcagccaatTCCGCacaccatcatcatcagcaacagcaacagcaccaccaccaacaacaacatcatcgcCAACAGCTTCTTCAACAACAGACACATGCTTCCGCACATTCAAGTgccgccagcagcagcagcggaaaACCACCTACGCAGTCTTCGACTTTATCCGCCGCATCTCCGCTGTCCCATGAACGTCGTTCGCGCAGCGATACGCCGCGTTTACATTCACCACTCCTCACCGAACTCGGTCTCGAACTAGGCTACAAGCCTTCGTCCTCTCGTgttggtggcggtggcggctaCTCTCCGACGCGCCTCTTTTCCGACGATCTTGCCGAACTGGTAGGCGCCGCTGTTCAGCACTCTTCCACATCTGCCACGgccgcaacaacaaccgccACCGTGACCAGCAGCAGTTCGGCGCCTCTAGCAATTACTTCCTCTTCGGCGGGCAGTGCTGTGGGTTCTTCCTCTGCGACAGCAACGAGTAGCGGGATTAGTTCGAGCAGCGGCAGCATTAAAATAGAACCGATCATCACGAGCGCCGAGTAA
- Protein Sequence
- MLENSHAWMGASSSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDIKDDGMAAHLPPYGRHSPIFPFQDVVSGPSPLNYPVGPPVGPCPNGIPTPTGDQMSQEATAAAVAAVAHNIRQQMQMAQAAAQHQHQHAAESASPNIFNLPPHLQPHLAAAAAAAAVGGGGGGPGGGGIPLPKASISPALSSTSQPGALLSARHAASPCGLPPSMAAQVAALHMAGGGGGPGGPVGSAPHPALLSQQQQHQLQQLHLQQQHALHQQQQQQLHQQQQHSSALVGFGASSMSHPSVSGAAAAAANSAHHHHQQQQQHHHQQQHHRQQLLQQQTHASAHSSAASSSSGKPPTQSSTLSAASPLSHERRSRSDTPRLHSPLLTELGLELGYKPSSSRVGGGGGYSPTRLFSDDLAELVGAAVQHSSTSATAATTTATVTSSSSAPLAITSSSAGSAVGSSSATATSSGISSSSGSIKIEPIITSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -