Svar011705.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421844.1:13466781-13467251[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-18 9.1e-15 54.5 0.0 2 44 63 105 62 106 0.93 2 2 0.00095 1.8 8.8 0.0 23 37 131 145 118 150 0.85
Sequence Information
- Coding Sequence
- atgaaaagtattcGCAATAAGAATACACGAACCGTAGTAGCCGCGGCAGCCATAGGCGGCGATAGCGTTATTTTAAATCCTGCACTTGGCCACTTTGAGACCTTAAAAGTCGAAAGTTTTTCCACAGCATCGTCTTCCTTTAATGCTAGTGGGCGTGCCGGTGCCGGTGTCAGCCACTCCCCCAACGATGACACACTTGATTTGGCCGTACAAGCCGTTCTTGAGGAGGGCATGAGTCTGCAAAAGGCCGCACACAAATACGATATTTCAAAAACCGTACTCTGGCGGCGCGTACGCAAGCATCACAACTATATGAAAACGACACGCGAAAATCCGGTCCTGTCACTCGCCTATGAGCGTCTTAAAGGCGGCGATTCACTGAAAAGCATCAGTCGCGAACTCGATATACCCATGTCGACGCTTCATCGTCACAAAGTGCGTCTCGCAGCGCAAGGTCGCCTGCCAGACTAG
- Protein Sequence
- MKSIRNKNTRTVVAAAAIGGDSVILNPALGHFETLKVESFSTASSSFNASGRAGAGVSHSPNDDTLDLAVQAVLEEGMSLQKAAHKYDISKTVLWRRVRKHHNYMKTTRENPVLSLAYERLKGGDSLKSISRELDIPMSTLHRHKVRLAAQGRLPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01378318;
- 90% Identity
- iTF_01378318;
- 80% Identity
- -