Svar020658.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- -
- Assembly
- GCA_949127995.1
- Location
- OX421846.1:25045759-25052582[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-12 7.3e-09 35.6 0.0 3 41 212 250 210 254 0.89 2 3 0.012 22 5.3 0.0 2 38 258 294 257 298 0.81 3 3 1e-08 1.9e-05 24.7 0.0 9 40 324 358 320 361 0.88
Sequence Information
- Coding Sequence
- atgtCTGAATCGGAAAATAACCAAGAAACTAATGGAACCGTTAACGGCGACGTGCCCGAAATCGAATTGATTATTAAGgaagaatatttttgtgcGAACGAACCGTTTAAAGAAGAACCAGAAGATGATAGACTTACTGAAACCGCCGTCGTCGCGGAGGATGAGAATCGTGCCTTAACTCAATACGTGACCTTGACGACCGTCGTTCCCAATCGGCATGATCTTTGCATAATGCAACAAAACACTTATCAGCTAAAATACACATATGAGCAGCAGGAGGACATTAAACAAATCGTGCCAATCGAAGTAAATGTTGTACCGGCGCAGTCGTCACTTCCGTCACCTTtgaatttcatcaaaatagAATCTTCCTCCTCCGCATCGACAAGTTCTGCCGCTGAAGAAATTGAACCTGTTCACACGGCGCCCGATAGTGAAATAGACTTTGCTAGTGTTGTGGAAGAGGCGTGTGAGGGTCTTTTTGAAgatattgaaaatgatttggATTTACATCTGAGCGAACAAGCCACAAGCGACGATGTGAACGACAAAGTTGAAACCCTTGATACTACTTCAAGGACTCATAGTGACGCGGCGACCCGTGTAGCAAAACCAAATCGGCAACACGATTCCGAAGACATGAAACGCGCCGTCGCAGCTGTGCTGGAGGAGGGAATGAGTTTAGGAAAGGCCGCAAAGAAATATAATCTCGTTAAATCTACAGTTTGGTCACGTGTCTCGAAGGATCCGAAGCATCAGcatcgaaaaacaaatacgGCACTGGCCGAACGTATATTTAACAAACTCGCGGAGGGCATGACACTATCGCAAATTTCGCGTTCGCTCAATGTGGCAAAATCGACGGTGCACCAACACAAAATGCGACTCACCAAATGTGGACTGTTGCCCGCTGGACCGCTTGTAACGAATTTCAAGCGTGATGCCGATGAAAACCTTAATGAGCGTCTCGTACAAGCTTATCGTGGATTTCGAGTAAACGGCATGTCTGTGCGTTTTGCCgctgaatttttttcagtGCCACTAACGACGTTATGGCGCTTTATTAAACGCCATCAATTAACAGCGGCATCGACATCACCCAAACGTAATTGTGATGCAGAGCGTTCTGCTCTTATTAAAGCTGCAGTCGCTGAAGAGCTGGCAGATGATAATGCTGAAAATATAAGACcgacaacatcaacaattAAAACCGAAATCGATCCAGAGGATCACTTGCTTTTCGAGCAGACACTACTTAATCAATTGTTTGATTAG
- Protein Sequence
- MSESENNQETNGTVNGDVPEIELIIKEEYFCANEPFKEEPEDDRLTETAVVAEDENRALTQYVTLTTVVPNRHDLCIMQQNTYQLKYTYEQQEDIKQIVPIEVNVVPAQSSLPSPLNFIKIESSSSASTSSAAEEIEPVHTAPDSEIDFASVVEEACEGLFEDIENDLDLHLSEQATSDDVNDKVETLDTTSRTHSDAATRVAKPNRQHDSEDMKRAVAAVLEEGMSLGKAAKKYNLVKSTVWSRVSKDPKHQHRKTNTALAERIFNKLAEGMTLSQISRSLNVAKSTVHQHKMRLTKCGLLPAGPLVTNFKRDADENLNERLVQAYRGFRVNGMSVRFAAEFFSVPLTTLWRFIKRHQLTAASTSPKRNCDAERSALIKAAVAEELADDNAENIRPTTSTIKTEIDPEDHLLFEQTLLNQLFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -