Svar016793.1
Basic Information
- Insect
- Suillia variegata
- Gene Symbol
- br
- Assembly
- GCA_949127995.1
- Location
- OX421845.1:23553784-23556332[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.7e-18 1.4e-14 53.9 0.0 2 44 382 424 381 425 0.95 2 3 0.0049 9.3 6.5 0.0 23 37 450 464 440 469 0.84 3 3 4.9e-18 9.2e-15 54.5 0.0 3 41 492 530 490 532 0.92
Sequence Information
- Coding Sequence
- ATGAACCACCTCAAATGGATGGGCCACACGACCACAATATTCGATATCCAGCGGAATCTGCGCAGCGATTCGCAAAGCTGCGAAGTGACGCTAGCGGCCAATGGACGCTCGGTAAAGGCACATCGCTTTGTGCTCTCGTCGTGCAGCGATTTGCTGCGTAATCTGTTGGCGGATGTGCCAATTGGCCAGGAGGCCACGATTGTTGTGCCGGACATTAAAGGCTCGCTCCTGGATAGTGTGCTCTCGTTCATCTATATGGGCGAGACGAGTCTCACGTCGACCAATCTCTCTGAATTTTTGGAAGCCATCAACATTTTGGGCATCAAGTCGGCCATCAGTTTCGAGTGCAATGCGGCAGCACATAGTTTGGCTGTTGCGTCTTCGGCGACGACCGCGTCCACCACTTCGCCCGTAAAAACTTTAAGTGGCATTCATATTGGACAAGAGGAACTGATGGAGACCGATAACATGGTCGAGCAGAAAATCGAGGCTCAGAATGTCATCGTAGAATCGCCGGCGCAATCTACCTCCACACGCGATCTTGAATTTCTTGATGTCTACGCAGAGCCACAGCATAAGATCACCTACTCAATTGAACACATGCCGGGCTCAGCGAATGGCAACGAATTTATACTCACCGAAAACTCGGGAACTTTCACTCTTACACAAAATGCAGCGGGCAAGTTGGAAAACACTTCTAGCGCCGGTTCGACGGTAGGAAAAATCGAAGAAGTCGACgaagaggaggaggaagaagaCGATGCCGACGCCGACGGCATTATTGAGGACTATAGCAGCAGCGGTGTTGGCGAGCATATTATTGAAATAGCGGCGGCAGGTGCTAACACAGCGAAGACAACTACTCCGACGaccacatcaacaacaactacaacaaccgAAAGTGCAGTTATCGAATTAAAACCGTCGTCGTCAAAAATTGAATggacaaaaatcaacaacaaaatgaaaagtatTCGCAATAAGAATACACGAACCGTAGTAGCGGCGGCAGCCACAGGCGGCGGTAGCGTTGTTTCAAATCCTGCACTTGGCCACTTTGAGACCTTAAAAGTCGAAAGTTTCTCCACAGCATCGTCTTCCTTTAATGCTAGTGCGCGTGCCGGTGTCGGCCACTCCCCCAACGATGACACTCTTGATTTGGCCGTACAAGCCGTTCTCGAGGAGGGCATGAGTCTGCAAAAGGCCGCACACAAATACGATATTTCAAAAACCGTACTCTGGCGGCGCGTACGCAAGCATCCCAACTATATGAAAACGACACGCGAAAATCCGGTCCTGTCACTCGCCTATGAGCGTCTTAAAGGCGGCGATTCACTGAAAAGCATCAGTCGCGAACTCGATATACCCATGTCGACGCTTCATCGTCACAAAGTGCGTCTAGCAGCGCAAGGTCGCCTGCCAGACTATGTGACATTCAAGAAACGCGACTCCATTTCGAAGGATGAATTGAAGGAGAAACTCGCCAAAGCGGTACATGCGTGTGTGCACGAGGGCATGTCGCAGAATCATGCGGCGAATTTGTTCGACATACCGAAGAGTACGCTGTGGCGTCATCTGCAAAAGCGCGTCGCCGAGGCGGAATTATCGGAGGGTATTTCAGCCGGTAACATTAAAGAGGAGGTTATCTTGTCGTAA
- Protein Sequence
- MNHLKWMGHTTTIFDIQRNLRSDSQSCEVTLAANGRSVKAHRFVLSSCSDLLRNLLADVPIGQEATIVVPDIKGSLLDSVLSFIYMGETSLTSTNLSEFLEAINILGIKSAISFECNAAAHSLAVASSATTASTTSPVKTLSGIHIGQEELMETDNMVEQKIEAQNVIVESPAQSTSTRDLEFLDVYAEPQHKITYSIEHMPGSANGNEFILTENSGTFTLTQNAAGKLENTSSAGSTVGKIEEVDEEEEEEDDADADGIIEDYSSSGVGEHIIEIAAAGANTAKTTTPTTTSTTTTTTESAVIELKPSSSKIEWTKINNKMKSIRNKNTRTVVAAAATGGGSVVSNPALGHFETLKVESFSTASSSFNASARAGVGHSPNDDTLDLAVQAVLEEGMSLQKAAHKYDISKTVLWRRVRKHPNYMKTTRENPVLSLAYERLKGGDSLKSISRELDIPMSTLHRHKVRLAAQGRLPDYVTFKKRDSISKDELKEKLAKAVHACVHEGMSQNHAANLFDIPKSTLWRHLQKRVAEAELSEGISAGNIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01378525;
- 90% Identity
- iTF_01378525;
- 80% Identity
- iTF_01378525;