Smeg016605.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292529.1:11470598-11501883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 1.8 9.9 0.5 1 23 991 1013 991 1013 0.88 2 11 0.06 4.7 8.5 0.1 2 23 1021 1043 1021 1043 0.95 3 11 0.001 0.081 14.1 1.8 1 23 1047 1069 1047 1069 0.97 4 11 0.024 1.9 9.8 0.5 1 23 1074 1097 1074 1097 0.98 5 11 0.25 19 6.6 1.8 1 23 1101 1124 1101 1124 0.90 6 11 0.08 6.2 8.2 0.8 2 22 1137 1157 1136 1161 0.92 7 11 0.29 22 6.4 2.9 3 23 1180 1201 1179 1201 0.95 8 11 0.69 54 5.2 1.3 3 23 1260 1280 1259 1280 0.95 9 11 3.2e-05 0.0025 18.8 0.4 2 23 1286 1307 1285 1307 0.97 10 11 9.3e-06 0.00073 20.5 0.3 1 23 1313 1335 1313 1335 0.98 11 11 5.7e-06 0.00044 21.2 1.4 1 23 1341 1364 1341 1364 0.98
Sequence Information
- Coding Sequence
- atgggtgactttaaCACATGTCTCCTTAAGCAAGACTATCGTTCTTCTTCCCTATGCTCCTTAATAGAATCCAGTAATCTGTCCATTCTTCCGCTTAATGCTACTCATCATTTTCCCAATTCTAATCCATCACTTCTAGACCTAATTATTGTTTCTTCTCCTAATCGTGTCGCTAAGCATGGTCAATGCTCGGCCGATGCCTTCTCCTATCATGATCTTATTTTCCTTTCTTACAAAATTCGTTGTCCTAAGGTAAAAGTTAAAACACTAATGCAACGTAACTTTGGTGCTATTAACATTAACGACCTTCACGAGGATGCCAACGCAATAGACTGGTCACCGCTCTTTGCCTCTTCTTCAGTCGACGATCAAGTAAATTTCTTTACAACTGCGCTCGTAAATCTATACGACCGCCACGCGCCAGTGCGAGCAGTTAAAGCAACCTTTGGAGCATCTAACGTGGAAGTATGCAGGATATGCTTGGCCACGGATGTCAAGATGTACAGCCTGCAAGACACACACCTTGGCCGCTGTATAGAATCTGTCACTGGAATTATTATTGATaaGTCAGATGAAGTTTTACCAAAATATGTGTGCTATGAATGTGCAGCTTGCTTGATAAAATGCAATAAACTAATAGAAAAAAGCAGGATAGCACAAGCAACAGTTCAAGATATATTTACTAAGAATGGACAGGTAACGAAATCTCTAATCAAAGACAAGAATAGGGCCGAACTGAACTTACAGTCTCCTCTAGAGAAATCTATAGTTATAGATTACTATATTGGGAATAACATTGACCTTAACACATCCAATTGTATTAAGGTAGAAACTGATCCTGATGAAAAAATAGACCAATCATTTCACAAGGACACAGTTATATCAGAAGACTCCAAAGCTATGGAAGAAACTGAACTTGATGAACAATtagacaataaattaataatttatataaaagaagAGCCATCTCATGAGGACATAGATACAGATACTATTAATATGGAACTTGTAACTGAAGGAACTCAAATGGATGAAATATGTTCTGGTGATGATAAAGACATTCCAGTTGTAAAAGATCCTTTACACGATAGTGGCTCTAATGAAAATGACTTTATAAGTCTGAAACCCTATCAGcgCACCAAAGCATTAGTTACCCACAAACATGATAAACCTACTTATGATGAATTTAAAATGCGGCTAGCAAAAATTAAGGCAATGAAAGgcaagaacataaataaatctaCTTCTGACGAAACACTTGAAGAATATATAAAGCAATACTTCAATGTTGATGTGGTACGgCCAAACTTCAAATTTGGAGCGTCAAATGTGGAAGCATGCAGGATATGCTTGGCCACGGATGTCAAGATGTACAGCCTGCAAGACACACACCTTGGCCGCTGTATAGAATCTGTCACTGGAATTGATaaatcAGATGGAGGTTTACCAAACTATGTATGCTATGAATGTGCACCGTGCTTGATAAAATGCAATAAACTAATAGAAAAAAGTAGAAGAGCTCAGGCAACACTTCAAGATATATTTTCTAAGAATGGACAGATAACAAAAACTCTTATAGAAGAACAGAACAGGTCCAAACTGAACTTACAGTCTCCGCTAGACAGCTACCTACTGATAAATTACTATCATATTGTAAGTGACAGTGACGTTAACACATCCAATTGTACTGAGCCACAAACTGATCTTGACgaaaaaattgtcaatttattaaaaaatgaactAAAAGAAGAGTCTGAAGAGGACATAGATATATCAGAAGATAGAATTAGAAGTGCTGAGATGTCTACTGATGAAGATGATGTACAAGAAATTAAAGCAGATATTCCAGTTATAGAAGTTTTATCAGATGATGATACTAATAAAGACAACTTCATTAGTTTGAAACCTTATATGGTGAAGATGGATAGTTCAAATTCTTACTTTGAGGCATCATCTGTGGAAGCATGCAGGATATGCTTAGCCACCGATGTTAATTTGGAAAGCCTGCTAAATACACATCTTGAAAGCTGTATGGATTCTGTTGCTGGATGCATGCCGAACTATGATTTAGACGGTCTTCCACAATTTGTCTGCCAACAATGTGCTCCAATTCTTGTAAAATGCAGTGAACTCATTAAGAAATGTTTGACATCACAAGCAAAACTACTTGATATATTTGCTAAGCATGGACAGgtAACCAAAAGTCTAATAAAAGAAGAACAAACAGAAGGCAGTACTTCTGAAGCAAATGTGACTTctacatataataatagtacATCAATTAATGATTTCTTGACTAAATATGAAAATGTCAATATCAGTTCAGATTTGATTAAAACAAAATCAGAACACAATTCCAGTGGCAATGCTACTCATTGTAAAAATGAAGACCTCCCATGTATAAAAATAGAAGTACAAGAGATTGAATCTAAGCAATTTAAAGTAGAATTAAATGTCAATGAATTAGATGAAGATGCGTTAAATGTTAATGAATTAGAATTAAATGAAGATGTATTAAATGTTAATGAATTGGAATTAAATGTAGATGtgttaaaagaaaatgtattacATGTTAATGCATTGGAATTAAATGAAGATGAGTTAAAAGAAGattcattaattataaatgaGTTGGATGTTAAAGAACTTAGTGAAATAGACAGTGACACAGATAATGACAGTGACGATGATCCGGAAGGGAGTGTGACCAGCTCTTCTATAGGAAGCCTTAATACAAATGACGATCTCAGCAGTGAATCTAGTTCAGATTCTGAGGTTAAAAAGGAGAAAAAGAATATTAAAGTAACAAGCGCAAAAAAGAAGGTAGCTAAAAGAAATGACAAAGGATTGACTCCGGTCGAAACGGAAATGCAAAAGTACTTCGACATTGTAGAGTTACCATCGtTAGAAGAACAAATACAAGAATGGGCAAAGGGTACGACTCGTCGTCCTGTGACGTGTAAGAATGTGTACCAATGtgagatatgcaacaaaatgtTTGGTAATGTCATCACTTACCACGTTCACGCTACCGGTCACGATCCAattctAGGTCCAGCCGAATGTCCAGTGTGTAAGCTTCGTTTTAAAAGCGAGGCGCTGGCGGCATCCCACGCAAGACGTGATCACAGCAAGAAATTCATTTGCAAAACGTGTCCTAAAACTTTTACGAATGCAGGTGTAGCGAAGAAGCACCACCGCCTCCACGTGGGCCACGAGTACAAGTGCCCGCTGTGTGAATTCTCTGCGCGGCACCAGTCGGGGGTGGGCGAGCACCAGCGGCGCGCGCACGGCACCGCGCACGCCTGCGCGCGCTGCGGCCGCGCCTTCCACACCGCGCGGGGGCTCGACGTACATCTACATGCCAAGCATCGGACACTACACCAAGAAGAATTGCCCGAGAAGTGTCGTTGTGAACAATGCGATATTGGCTTCGTATCAGAGGAGGCCCGACGGGTGCACATGATGACCTCCAAACAACACAAAGATAAAGAAAAATGCGTTACAAGCAGCCAAGAGTCTACTCTCCGCAACTGCTGTAAGATTTGCGGTCAGCAGTGCGAGTCGCTGAAGGAGCTGGTGCTGCACAAGAGGGCGGAGCACCCCAGCAGTCGCCGCGGTCTACGCTCCAACCATCCGTGGAAGGGAAAGGTGCCCTACCCTATATGCTGCGAACTTTGTGGTGAAACAATAAACACTCGTCGCCATCACTGGCACCACATGCGGCGGCAGCACCCCAAGGAGGTGGGCACCTACCAAGCCGTCGTCACCGCCATCTGTGATATTTGTGGCAAGGGTTGCCAGaGCACTTCAATACTGCGTCTACACAAGCTCCGCCACCGCAGTCCTTCCATCCGCTGTCAGCTGTGTCCGCGTATGTTCTACGACAAGTACGGCCTCATCCGACATGCGCGTACGCACAAAGCTGAGAAGCCGCACCAGTGCCGCATCTGCGGAAAAGCGTTCAAAGTGCCAGGAAACTTGGATAGGCACGCCAAAgtACACACGGACGACACTCCATTTGAATGCACGATGTGCGGTAAAAAGTTCAAATACTCGTCAAGTGTGAAACTACACGTCCGCACTGTTCACTACAAACAACCTCAGCCGCCTCGGAAGAAGAGGAGCAAGGGCGCGAAAGATGCGATTGATTCATAA
- Protein Sequence
- MGDFNTCLLKQDYRSSSLCSLIESSNLSILPLNATHHFPNSNPSLLDLIIVSSPNRVAKHGQCSADAFSYHDLIFLSYKIRCPKVKVKTLMQRNFGAININDLHEDANAIDWSPLFASSSVDDQVNFFTTALVNLYDRHAPVRAVKATFGASNVEVCRICLATDVKMYSLQDTHLGRCIESVTGIIIDKSDEVLPKYVCYECAACLIKCNKLIEKSRIAQATVQDIFTKNGQVTKSLIKDKNRAELNLQSPLEKSIVIDYYIGNNIDLNTSNCIKVETDPDEKIDQSFHKDTVISEDSKAMEETELDEQLDNKLIIYIKEEPSHEDIDTDTINMELVTEGTQMDEICSGDDKDIPVVKDPLHDSGSNENDFISLKPYQRTKALVTHKHDKPTYDEFKMRLAKIKAMKGKNINKSTSDETLEEYIKQYFNVDVVRPNFKFGASNVEACRICLATDVKMYSLQDTHLGRCIESVTGIDKSDGGLPNYVCYECAPCLIKCNKLIEKSRRAQATLQDIFSKNGQITKTLIEEQNRSKLNLQSPLDSYLLINYYHIVSDSDVNTSNCTEPQTDLDEKIVNLLKNELKEESEEDIDISEDRIRSAEMSTDEDDVQEIKADIPVIEVLSDDDTNKDNFISLKPYMVKMDSSNSYFEASSVEACRICLATDVNLESLLNTHLESCMDSVAGCMPNYDLDGLPQFVCQQCAPILVKCSELIKKCLTSQAKLLDIFAKHGQVTKSLIKEEQTEGSTSEANVTSTYNNSTSINDFLTKYENVNISSDLIKTKSEHNSSGNATHCKNEDLPCIKIEVQEIESKQFKVELNVNELDEDALNVNELELNEDVLNVNELELNVDVLKENVLHVNALELNEDELKEDSLIINELDVKELSEIDSDTDNDSDDDPEGSVTSSSIGSLNTNDDLSSESSSDSEVKKEKKNIKVTSAKKKVAKRNDKGLTPVETEMQKYFDIVELPSLEEQIQEWAKGTTRRPVTCKNVYQCEICNKMFGNVITYHVHATGHDPILGPAECPVCKLRFKSEALAASHARRDHSKKFICKTCPKTFTNAGVAKKHHRLHVGHEYKCPLCEFSARHQSGVGEHQRRAHGTAHACARCGRAFHTARGLDVHLHAKHRTLHQEELPEKCRCEQCDIGFVSEEARRVHMMTSKQHKDKEKCVTSSQESTLRNCCKICGQQCESLKELVLHKRAEHPSSRRGLRSNHPWKGKVPYPICCELCGETINTRRHHWHHMRRQHPKEVGTYQAVVTAICDICGKGCQSTSILRLHKLRHRSPSIRCQLCPRMFYDKYGLIRHARTHKAEKPHQCRICGKAFKVPGNLDRHAKVHTDDTPFECTMCGKKFKYSSSVKLHVRTVHYKQPQPPRKKRSKGAKDAIDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -