Smeg023701.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292539.1:8713837-8716823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0051 0.4 11.9 0.5 1 23 249 272 249 272 0.94 2 18 2.7e-05 0.0021 19.1 5.3 1 23 277 299 277 299 0.99 3 18 0.023 1.8 9.8 1.9 1 23 329 352 329 352 0.95 4 18 2.5 2e+02 3.4 1.0 3 21 363 381 361 382 0.87 5 18 0.037 2.9 9.2 0.5 2 23 414 436 413 436 0.92 6 18 1.1 88 4.5 3.5 1 23 442 465 442 465 0.92 7 18 0.00062 0.048 14.8 0.5 3 21 470 488 468 489 0.94 8 18 0.042 3.2 9.0 0.1 2 23 498 520 497 520 0.90 9 18 5.7 4.4e+02 2.3 0.5 1 23 525 548 525 548 0.91 10 18 0.005 0.39 12.0 0.2 2 23 561 582 560 582 0.96 11 18 0.0025 0.19 12.9 2.4 1 23 588 610 588 610 0.97 12 18 0.0069 0.54 11.5 2.8 1 23 646 668 646 668 0.97 13 18 0.034 2.7 9.3 0.2 3 23 674 694 673 694 0.94 14 18 0.001 0.079 14.1 1.5 2 23 713 735 712 735 0.96 15 18 0.002 0.15 13.2 3.9 1 23 741 763 741 763 0.98 16 18 0.002 0.16 13.2 5.4 2 23 770 791 769 791 0.95 17 18 2.7e-05 0.0021 19.1 2.0 1 23 797 820 797 820 0.97 18 18 0.14 11 7.4 1.8 2 23 826 848 825 848 0.95
Sequence Information
- Coding Sequence
- ATGGAGACTCTGCCCCCTGATTCCAGCAAGTTAGACTGGATTAAACAGAAGTTACAGACTGTTTGGACATGTGAAAAGTTCTGCGGACTGTGTCTGGAAAGCCAAGGCAACTTCTGCTCCGTTGATATGGAGCTTGTTATCAACAATCAGACATTTTCTAAATGCTTACAGGATCTTGTCAACTATGTTTTCAATGATGATATAGAAAACCTGATGTCAAGCTCTCATTTATGCGACAGTTGTACAGAAAAGATAATACAGTCTTACATTTTCATTCACAATACAAAACAGTTGTCGAAAATATTGAATAACTGCGTTACTGACATCTACTCTAAAGTTTTTGATGTCAATGAACAACTTGAATGTAACACCAAGTACGACAATGCAAATGTCATGATTGTCTTAGAAAATGACACGGAACTTTATAAAACTATGATTGATGTCAAATCAATGACAGAAATAGTTCCAACTACTAGACCTATAGCTATGAAGGAAACAGTAACAACTATTCCAAAACAAGAGCCAAAAGTTTTTGAAGATAATAAACTACAAATTCCACTTATAACTGCAGTAAGTTCATTAGCCATAAAAAAAGAGATTGAAAGTCCAAAAGTGGTGACAGAAATCAAGGAAAGAAAGGCGGTCAAGCCTGATAATACACCAAACATCACCTTGAAAGGAGGTCATATAGTTATTAAACCTTTGAACTCCATTAATTCAACTACAGTTCCTCGGTACAACACATATGAGTGTACAGATTGTCCAGATATATTCACCACATACAGATCTCTAAAAGAACATGAAAAGGCCAAACATAAAAAGTCTGTATACTACTGTAACCTATGTGATAAATGTTACACTACTCAACAATATTTGAACATACACTACAAGACACATGCAAGAGCTAGGTGCAAATTGTGCCAAGTGATACTCCCAGAAGATGAATTGATggatcatttaaaaataaaccatgcTAACTTAGTTCACCCTTGCAAATTTTGTGACTTGGCTTACTACACCAAAGAATCTTTGGACACCCATTTCAAAATTAGCCACTTAGTCAATGATAAGAAACCTAAATCTCAATGTATTATGTGTCTAAGGAACTTTACAGAGCTGGAGGAACTGAAGAAGCATAAATGCAAATTCTCATGCTCAGAATGTTTTGTTATGCCATGCATTCACTACAAGTACTTGCTCTCTTTCAGAGAACAGTTGTTAAGCCATGTAAATAAAGTGAAGTGTATAGATTGTGACTATGTTACTCGTCGAAAGGAACATTTGATTGGGCACGCGAATCGAGAGCATTTGAATCATCACCCATTTACATGTGCTGACTGTTGCCAACAATTTTATACTAAGCTAAGTTTGAAGACCCACATTGTCCAGTTTCACCAAGAAATATTCTGTCAATACTGTGATTTTCAATTTAAAGATAATTCTACATTAGAAAACCATAGAAAAGCCTGTAAAATTGTCGTACGAGCGGTTGTCTGTTCACAATGTGTTGCCTCTTTTGACACTGCTGAAGAGTTAACTAATCATGAAACCTTGAGGCATAATGAAGGAGTTCATGCATGTAAACTTTGCAAGGGAAGATTTTTAACTGAAATTGAACTAGAAGAGCATCGCGCTAAAGTTCATAGTGGCATTCAGTGTAAGAAAAGACGGAAGCACATAGAGTGCTCCCTTTGTAACATAATGTTCAACAATGTGAAGGAATTACTTCAACATGAGAAATCGCACGACGCAAATGATATTTATCCTTGTAAAGAATGCAAGAAACAATTCAAATCGTTAATGAAATTATATATTCACAATCAAAGGCATTATACTGACAGAATAAGTTGTTCTGGTTGTAATAGAAAAGTTGCTAAGTCATTTTACGCGCAACATGCGGTGCGGTGTCCATACAAAAGAGACGTGGCATTGAGCCATGTTTGTGAAGTCTGTGGCAAGGCCTTCCATTTAGAATCTCTGCTCCGCTTCCACCAGAAGACCCACATGGATCCCGAACCGTGCCCTAAATGTGAAAAGATTTTAAAGCCAACTACTCTTAAAAGACATATGGAGCAAGTTCATGGAGATAATAATGAAAAACCTAAGAAAACAACTGTGCCAAGCAAGCCAAATATTGAATGTGAGTTATGCGGACATGTGGTGAGAAAGAAATGTGACTTGGAAGCTCATATGAACCGTTACCATCTCAAAATCAAGCCGTTTGTCTGTCATATATGCAGCAAGGACTTTTGTGGTAAAGTTCGTTTGAAGGAGCACATAACAACACACTCTACTGATAACAGCTGTTTTTGTTCAGTCTGTGGCAAGAAATTCGCCAACCGTGTATGTCTGAAAATGCACTTCAGAATTCACACAGGAGAATATCCTTATTCCTGTGATATTTGCGGACAGAAATTCAGATCTTCTAGTTTGATGAAGACTCACAGACTAAAAAAGCATTTAGACAAAACTGTTTCCTGTCCATTATGTGACAATATGTTCTACATGGCCAGAGATATGAGGCATCACTTCAAGAAAACCCATTGGAAGTACAAAGATGGAAGGCCTTTCAATCCTAAAGAAGTTGCAGAATTGTCTAAAGAACACTACTACCTTTTTGAAGATGGTAGACTGccgaaaataaaaaaggaatga
- Protein Sequence
- METLPPDSSKLDWIKQKLQTVWTCEKFCGLCLESQGNFCSVDMELVINNQTFSKCLQDLVNYVFNDDIENLMSSSHLCDSCTEKIIQSYIFIHNTKQLSKILNNCVTDIYSKVFDVNEQLECNTKYDNANVMIVLENDTELYKTMIDVKSMTEIVPTTRPIAMKETVTTIPKQEPKVFEDNKLQIPLITAVSSLAIKKEIESPKVVTEIKERKAVKPDNTPNITLKGGHIVIKPLNSINSTTVPRYNTYECTDCPDIFTTYRSLKEHEKAKHKKSVYYCNLCDKCYTTQQYLNIHYKTHARARCKLCQVILPEDELMDHLKINHANLVHPCKFCDLAYYTKESLDTHFKISHLVNDKKPKSQCIMCLRNFTELEELKKHKCKFSCSECFVMPCIHYKYLLSFREQLLSHVNKVKCIDCDYVTRRKEHLIGHANREHLNHHPFTCADCCQQFYTKLSLKTHIVQFHQEIFCQYCDFQFKDNSTLENHRKACKIVVRAVVCSQCVASFDTAEELTNHETLRHNEGVHACKLCKGRFLTEIELEEHRAKVHSGIQCKKRRKHIECSLCNIMFNNVKELLQHEKSHDANDIYPCKECKKQFKSLMKLYIHNQRHYTDRISCSGCNRKVAKSFYAQHAVRCPYKRDVALSHVCEVCGKAFHLESLLRFHQKTHMDPEPCPKCEKILKPTTLKRHMEQVHGDNNEKPKKTTVPSKPNIECELCGHVVRKKCDLEAHMNRYHLKIKPFVCHICSKDFCGKVRLKEHITTHSTDNSCFCSVCGKKFANRVCLKMHFRIHTGEYPYSCDICGQKFRSSSLMKTHRLKKHLDKTVSCPLCDNMFYMARDMRHHFKKTHWKYKDGRPFNPKEVAELSKEHYYLFEDGRLPKIKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017616;
- 90% Identity
- -
- 80% Identity
- -