Smeg023206.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- Zfy1
- Assembly
- GCA_958496365.1
- Location
- OY292538.1:9039837-9056295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.56 44 5.5 0.2 1 23 174 196 174 196 0.97 2 12 0.073 5.7 8.3 3.2 1 23 203 225 203 225 0.97 3 12 0.78 61 5.0 1.5 1 15 229 243 229 252 0.82 4 12 8.6e-06 0.00067 20.6 3.7 1 23 257 279 257 280 0.95 5 12 0.00058 0.045 14.9 0.8 2 23 287 308 286 308 0.97 6 12 6.7e-06 0.00052 21.0 2.0 2 23 322 343 322 343 0.98 7 12 0.31 24 6.3 1.6 3 23 349 370 347 370 0.93 8 12 0.0029 0.23 12.7 2.0 2 23 381 403 381 403 0.97 9 12 0.16 12 7.2 0.5 1 23 410 433 410 433 0.92 10 12 0.0026 0.2 12.8 0.2 6 23 446 464 443 464 0.94 11 12 3.5e-05 0.0028 18.7 2.3 1 23 473 495 473 495 0.98 12 12 0.0008 0.062 14.5 0.3 1 23 500 523 500 523 0.97
Sequence Information
- Coding Sequence
- ATGGAAACGTCTGTGTCTGTGGAAATATCTGTGAAACCTGACCCAATGGGTGTTGAAAATGATGAAAATGGATCCAAAGTCAAACTAACTGAAGCTCAGGAATCTGATAAATtaaaagaagaagaaatttgGATTAAGACAGAGCCTCAAGAAGATGATACTCAAGATATACAGAAGGAAGGAGAACATGGAGAAAGTTCCGAAACAGATGTCATTCAAGTTAAGGAGGAACCTCAAGATGAATCCTGCAATAATGTATCTGAAGATCTGGAGACAAAATTGCCACTGAAAAAGAGAATAGAGAAGATAAAAGAAGAGGTAGATGCAAAATCCAGTGAAAAGGCAGAAAAGAATGTTAGTGGAGACAATGACAAGCCGGCGGGTAATACTCAACccaaaaCGGAAACCCTCCTGATGTATTCATACGAAGTTACGAAGAACATTGAAATAGTGACCATTGATGAGGAGGAGCGTCGCAAGGAGCACCAGGAGACGTTGAAGTCCCGTCAGCACATGAGACATGTCTGCGAGCTCTGTGCTGTGGGTTTTGTCATACAGCATGCTTATGACATGCATATGATGGTGCACTCTCCTGAATCAGGCGAGCATGAATGTGTGATATGCCACAGCCGTTTGAAGAGCGCCGACATGTTGTACCGTCACCGCCTACGTCACTACCGGCGGTACAGGTGCCTGCTGTGCCGCACTCGCTTCAAGGACAAGGACACGGCCGCCTGCCACGTCATGAACGACCATGCTGGACAGACCTTCGAGTGTGATCATTGTGGACGGGGATTTAAACGACCGCAATACCTCAAAAAACACGTAGAACAACACCACACGAAGCCACACCGGCTGGAGTGCGGCGTCTGTCAGCGAGTCTTCCACGAGCGGGGATGGTACAGGTCCCACATCAGgACACACAATGAAGAAGTAAGAAAACAGACGGTGAAGCTGCCAGCGACCTGCAAGGTATGCTCCCGCGAGTTCAAGAACAAGGCGAGCCTGAAGCGCCATCTGTTGACGCACGGCGAGAACGTGCACTGCGAGATCTGTTACGAGACGTGTGACAACAGGATCTCGCTCGGCAAGCACTACCTGCAGGTTCATAACGAGAAATATGAGGGTGCTCGGGAGGAGACGTGTTCTGTGTGCTTGCGTGTATGCGCCACGACCGCCATGCTGAAGCGGCACATGCAGAGGATGCACCAGGACAGGACCAAGAAATACCAGTGCGACTACTGCCAGCGGCTGTACCTGACGAAGGGCGAGGTGCGGTCGCACATCACGTGGTCGCACCAGTCGGGCGCGGCGCGGGGCGGGCACCCCTGCTCCTGCGGCCGCACCTTCCGCACGCCCGCGTTGCTGCGCGACCACACCGCGCGCCTGCACTCCAACCAGCCGCAGCCCAGGATACACCAGTGTGAACTCTGCGATAAGGCTTTTGCGAACAAACAAGTGCTTACTCGTCACAAGAAAAGCCATTCTAACGAGATGTACCCCTGCAATGAATGCGGGTTGCTATTCAAAACACAACCTTACGTCAAAGTGCACTACCAAATCAAACACCTAAATATGACGCGAGCACAAATCAATGCGCAAAGAAAGCTCAATAGACAAAGAATGATACAAGATAATATAGACAGAGGAACTAATTGGGAACCGCCTATCTCCAGCAAGAAGGCTGTTACTCCAGAAAGCAGTGAGGATCCCCTCCATGTCCAAGAAACCGATGTAACTATTAAAATCGAACCAGAAATTGATGATGGTCATGTACCGATGTTCCAAGGGTTTCTGGATATTAGCAGGGAATGA
- Protein Sequence
- METSVSVEISVKPDPMGVENDENGSKVKLTEAQESDKLKEEEIWIKTEPQEDDTQDIQKEGEHGESSETDVIQVKEEPQDESCNNVSEDLETKLPLKKRIEKIKEEVDAKSSEKAEKNVSGDNDKPAGNTQPKTETLLMYSYEVTKNIEIVTIDEEERRKEHQETLKSRQHMRHVCELCAVGFVIQHAYDMHMMVHSPESGEHECVICHSRLKSADMLYRHRLRHYRRYRCLLCRTRFKDKDTAACHVMNDHAGQTFECDHCGRGFKRPQYLKKHVEQHHTKPHRLECGVCQRVFHERGWYRSHIRTHNEEVRKQTVKLPATCKVCSREFKNKASLKRHLLTHGENVHCEICYETCDNRISLGKHYLQVHNEKYEGAREETCSVCLRVCATTAMLKRHMQRMHQDRTKKYQCDYCQRLYLTKGEVRSHITWSHQSGAARGGHPCSCGRTFRTPALLRDHTARLHSNQPQPRIHQCELCDKAFANKQVLTRHKKSHSNEMYPCNECGLLFKTQPYVKVHYQIKHLNMTRAQINAQRKLNRQRMIQDNIDRGTNWEPPISSKKAVTPESSEDPLHVQETDVTIKIEPEIDDGHVPMFQGFLDISRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -