Basic Information

Insect: Subacronicta megacephala
Gene Symbol: -
Assembly: GCA_958496365.1
Location: OY292524.1:12630640-12648184[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0027 0.21 12.8 0.6 1 23 270 292 270 292 0.99

2 11 0.013 0.97 10.7 6.7 1 23 299 322 299 322 0.97

3 11 3.4e-05 0.0026 18.8 0.2 1 23 353 376 353 376 0.98

4 11 0.0091 0.7 11.1 0.5 2 23 385 407 384 407 0.94

5 11 0.0061 0.47 11.7 0.1 2 20 418 436 418 438 0.95

6 11 0.00027 0.021 15.9 0.6 3 23 448 468 448 468 0.99

7 11 0.11 8.7 7.7 0.1 3 23 485 506 484 506 0.95

8 11 5.2e-05 0.0041 18.2 4.0 1 23 523 545 523 545 0.98

9 11 0.00034 0.027 15.6 0.0 1 23 551 573 551 573 0.97

10 11 3.3e-05 0.0026 18.8 3.1 1 23 579 601 579 601 0.96

11 11 0.0018 0.14 13.4 4.2 1 23 607 630 607 630 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0027	0.21	12.8	0.6	1	23	270	292	270	292	0.99
2	11	0.013	0.97	10.7	6.7	1	23	299	322	299	322	0.97
3	11	3.4e-05	0.0026	18.8	0.2	1	23	353	376	353	376	0.98
4	11	0.0091	0.7	11.1	0.5	2	23	385	407	384	407	0.94
5	11	0.0061	0.47	11.7	0.1	2	20	418	436	418	438	0.95
6	11	0.00027	0.021	15.9	0.6	3	23	448	468	448	468	0.99
7	11	0.11	8.7	7.7	0.1	3	23	485	506	484	506	0.95
8	11	5.2e-05	0.0041	18.2	4.0	1	23	523	545	523	545	0.98
9	11	0.00034	0.027	15.6	0.0	1	23	551	573	551	573	0.97
10	11	3.3e-05	0.0026	18.8	3.1	1	23	579	601	579	601	0.96
11	11	0.0018	0.14	13.4	4.2	1	23	607	630	607	630	0.96

Sequence Information

Coding Sequence: ATGGATGGCTTAAAATATTGTAGGATATGTCTTGTGACCGATGTGAAAATGTTTAGCCTGGAAGCTACGTCTAGCGATTCCATGGGCGTAGTTTATTCAAATTTAGCGCAGATTCCGATCTTTGATAGGAATCAGCATGTGTGTTTTGTATGTGCCAGTCTTCTCCAGAAGTATCAAGAATTCAAGTCAAAATGTCTCAGGGCTCACAACATTATTTCTAGAATCAAAGTTGGTTCAAAACAgATCACAGAACAAGCAATTCGCAGCATTGATAGAAAGTCAAACAAATTAGAATCAAGCTTAATACTTTCTCCAGTGGCTCTGTTTTATGATGAGTTGTCAAATACAGAAATTAATAAGATTGAATGCAAAGAAGACAAAGATAATAAagaattagaaataaatgtaaagaTTGAAGACATAAATAACACTGATTCAAATGAAAAACATGATTTGAATGATGATATCAATGAATTTATTGGAGATGATTTTATCAATTCATCTGAAGAGAATTTGccaataaaagttttaaaggtgaaacataaaaaacataatcataACAAAGAaccaaagacaaaaaaaataaaatataaaactatagaGAAAAGTGAGGATGATTTCAGTGATAATGAACCATTGTCTAAAAGTGTCACAAAGACATTAGCAATTAAAAAGACTGATAAGAAAAAGTATGGTCTGAACATTGGATACTTTGATGATTATGCGACAGTTGTGTTTCTCACCCCTGAAGATGCAAGGAAGGAGGTTCTGCTTAGAAAGGAGTCCAGTAATTACAAAAAGTCGCCATTTAAATGTGATTTATGTTATAGAGGATATGAAGCTAAAGCTGCATTTGAAAATCATATGAAGAAACATAgtattGAATATGGTGACTATGAATGTGATCTTTGCCACCTAAGGTTTCCTCAGCAAATATACTTGTGTAAGCATAGACTTTCATGTCACAAAAGAAAGTTTAGTTGTAAACTATGTCCATATGTGTGCTACTGTACTTATCAAGCAAAGACACATGTCAGCTTACATAAAGGGAAGAAATACCCTTGTAAAGACTGTGGAGAAATATTCAGCATGCCAAACAGTCTGTTAATGCACAAACGTATGAAGCACTTGAAGGAGGCAATCCGGGAGTCTGTGTGTGAACATTGCGGTAGTACATTTGGCACACCAAGAGGACtctttttacataatatgaagGTGCATAGGCAGGATAAAAATGACAAGTTAGGTCCGAAGTGTGATGAATGTGGCGTTCACTTCACGTCGGAGGTCGCCTGGAAGAGGCACTTAGTACTGTCATCAAAGCATAAAGTTAGTAACGGCTGCAAATATTGTGGGGACACATTTTCTAATATAGAGGATCTGAAATCTCACACAAGAGTACACTCACGGAAGCACATAAACAGATGCGACAGTGTCAAACTACCCTCAGCCTGTTCTATTTGTGACAAATGGCTGTCAAACCGCGCGGAGTATAAGGTCCACTTGACGTCAGAGCACCCCAACACCGACGAAGCGAAGAAGTTTAACGCCGACGACCAGACGCCGTTCGTGTGCGAAGTTTGTGGGCAGATGTTTAAGCAACAGTGTTTCCTGACGTATCACCAGCGCAAGCACACGGGGGAGCGGCCGTACTCGTGCGCGGAGTGCGGCAAGTCCTTCCAGCTGTCGGGCGCGCTCGCCATCCACCGCGCCGTCCACTCCCGCCGCCGCGCCCACGCTTGCCACATGTGCGCGAGAGTCTTCACATTCAAGAGCGCACTCAATAAACATATCAAGATACACCTCGGCATCCGTCCCCACAAGTGTGCGATATGCGACAAAGGCTTCATCCACATGTGCGACTTGAAGTTACACATCAAATACGTACACGACAAGGTGCCGTGgcctaagaaaaaaaacaagcgGAACACTGCCGAAGATGCACAGTATTTAGACTACAACTGA
Protein Sequence: MDGLKYCRICLVTDVKMFSLEATSSDSMGVVYSNLAQIPIFDRNQHVCFVCASLLQKYQEFKSKCLRAHNIISRIKVGSKQITEQAIRSIDRKSNKLESSLILSPVALFYDELSNTEINKIECKEDKDNKELEINVKIEDINNTDSNEKHDLNDDINEFIGDDFINSSEENLPIKVLKVKHKKHNHNKEPKTKKIKYKTIEKSEDDFSDNEPLSKSVTKTLAIKKTDKKKYGLNIGYFDDYATVVFLTPEDARKEVLLRKESSNYKKSPFKCDLCYRGYEAKAAFENHMKKHSIEYGDYECDLCHLRFPQQIYLCKHRLSCHKRKFSCKLCPYVCYCTYQAKTHVSLHKGKKYPCKDCGEIFSMPNSLLMHKRMKHLKEAIRESVCEHCGSTFGTPRGLFLHNMKVHRQDKNDKLGPKCDECGVHFTSEVAWKRHLVLSSKHKVSNGCKYCGDTFSNIEDLKSHTRVHSRKHINRCDSVKLPSACSICDKWLSNRAEYKVHLTSEHPNTDEAKKFNADDQTPFVCEVCGQMFKQQCFLTYHQRKHTGERPYSCAECGKSFQLSGALAIHRAVHSRRRAHACHMCARVFTFKSALNKHIKIHLGIRPHKCAICDKGFIHMCDLKLHIKYVHDKVPWPKKKNKRNTAEDAQYLDYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00383975;
90% Identity: -
80% Identity: -