Smeg023645.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- Zfy1
- Assembly
- GCA_958496365.1
- Location
- OY292539.1:7656263-7659043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.015 1.2 10.4 5.9 1 23 147 170 147 170 0.97 2 18 0.0003 0.024 15.8 0.9 1 23 179 202 179 202 0.96 3 18 0.019 1.5 10.1 0.8 2 23 215 237 215 237 0.97 4 18 0.00065 0.051 14.7 1.3 1 23 246 269 246 269 0.96 5 18 0.00033 0.025 15.7 2.9 1 23 280 303 280 304 0.96 6 18 0.00023 0.018 16.1 0.4 3 23 333 354 331 354 0.96 7 18 0.0013 0.1 13.8 1.2 2 23 364 386 363 386 0.96 8 18 0.041 3.2 9.1 0.6 2 19 391 408 390 411 0.92 9 18 0.00045 0.035 15.2 0.7 2 21 416 435 415 438 0.94 10 18 0.3 23 6.4 0.7 3 23 448 469 447 469 0.93 11 18 0.00025 0.019 16.0 4.0 1 23 474 497 474 497 0.95 12 18 0.00032 0.025 15.7 1.9 2 23 509 531 508 531 0.96 13 18 0.43 34 5.8 0.7 1 23 556 579 556 579 0.92 14 18 0.23 18 6.7 0.1 2 23 586 607 585 607 0.93 15 18 0.15 11 7.3 2.9 3 23 614 634 612 634 0.96 16 18 2.6 2e+02 3.4 0.5 2 23 672 693 671 693 0.93 17 18 0.02 1.5 10.1 0.1 1 23 700 722 700 722 0.97 18 18 0.086 6.7 8.1 1.9 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGGACATAGATGTTAAGGTTAAGATAGAAGATGTTGAAACTAGGAAAGACCCTACTTCGTTTTTACCGGAGGAGCCCATGTCTTATGAAattaagaagaaaaagaagaaaaagaaaaaactacAGGAAGACCCCTTTAAGGATATTGATGATAAGGTGGAAGTTAAAATTGAGCCAATGACTTTATTGGATCCAGAGGTTACTATAAAAGTTGAGAATATTAATGTGGAGTTTGATTTTGATAATTTTGCAGACAGTGGTGAATTGCTCGGAGGGCCCGAACGTGAGGAAAGTCAAGAACCAGTTGTAAAATTCGAGAAAGAAAATCGGGACGTCGTCGTCCCAGTGTCTTTCGAGAGCGTCTTAAACAATAAAGCTACCATTGAAAATCCTGACATGTTGCCGAACAATGAATTGCCTCTGAAACAAGCCCCAATCCACGTCTGCAAAGTATGTCATCTAGTCTTTCAATCAACTAAAACACTACGAATGCACCAGAAAAGAAAACACAAGTCCTTCAGAAAATCATTCAAACATATTTGTGACTACTGTGGGATGTCCTATGAAATGAAGAACAGTTTAGTCGCTCACATAAAGAGGAAACACGGACCTAATTCAATGCCTGATGACCGAGAAGAGAGGACTTGTGACATATGTGCACTAGTCTTCAAAGGAATGACCCGGTTACGGATGCATATGAGAAGAAAACATGGGTCCTTCCAAGAATCGTTCCAACACATTTGCAAAGACTGCGGTTTAACTTATGATAAGTACAGAAGTTTGATAGTCCATATACAACGTAAACATTCTAATAAAAAGCCTGAAATAAACCAATGGTACAATTGCCCATTCTGTCCTAAGATTTTTACAAAACGTGAAACTTACGCTAGACATGTGCAAAGAAAGCACCATTTAGCTGACGGTAGCATTAAGCAAGAAAATTTAACTGATAATTATTTAGAGGGTTGTAAGAATGAGGAAACTGGTGAAATTGCTTGTAAGGAATGCCCTTTAGTCTTTTCTTCAGTCAATTTCCTGAAACTGCACATGAGAAGGAAACATAACGCATTAAGAGAGGACTTCAGATTGAAATGTAGAATTTGTAACTTGTCTTACGATAAGGTTGAGAGCCTGAAAAGGCATGTGAGAAGAAAACATGACAAAGGTTCGTATTGTGAAGTTTGCAATAAGCAGTTTGATACACGAGAAATGTATCTTAACCATTCACATATGAAAGTGATAAAAGAGTGCAATATCTGCGGAATGATCTTTGCATCGAAGGGCGGTTTGGCGAAACATTTGAGGTGTACACATAAAATCGATACCCCCAAAACTGTGTTCTGCAGTATGTGCGATGCGGGCTTCTTCGATAAACGCCAATTAAAACCGCATTTTATGAAAGTGCATTTGAAAGTTTCTTATACGTGTCGATACtgcaaaaaggtttttaaagcCAAGGAGAGTTATCGACGGCACATACAATTCAAACACCCAAcagcaaataattttaatgctcCAATGCAGAAATGTGAGCAATGCAATGAGAAATTTAAAGACGAATTTGAGCTTTGTCGTCATGTAAATGTAGTTCACGGTCGCCCAGAAGATATGACTAAACAAGAAATGTATGatataaagaaagaagaagCAGATATAAAAGACTGTTTTCAGTGCACTAAGTGCTCGGACACATACTTAACATGGGAACAACTGAAGCTTCACTATGAAGCAAATCATCATAATATAGAAGAAACTCAGTGTCAGATATGTGGAGAGATTCTCCCAGGAAATGAATTACAAAAGCATATAAAAACTCTGCACACAGATAATGATATGCATTGCCGATACTGTGAGTTCAAGACAAATGTCAGAGTTAGTTTGACACAACACATGTTAAGGCATAAAAACGCTGAGACAATTCACTGTGATTACCCAGGTTGCAGGTATAAAACGTTCCACGAACGTGCTATGGAAAAACATAAGAGGAAACATGCCGATCAGGGAGTCAAACTCCAATGTACGCAGTGCCCCTTCCAGTCTatgaataaatacatattaaaatatcatatgGAAGCCCATGAAACTGGAAGGAAAAAGTACATGTGCGATCAATGTGATTATGCAACGATACTGCCAGCTAATTTAGTGCAACATAAATATAAGCATTCTGCGGAAAAACGGTTCAAATGTGAAGTTTGTCCATTTGCTACCAAGTACAATACATCACTTCGATTCCATGTAAGGAAAAAACACTGTGATCTCCCTACGTTCAgttaa
- Protein Sequence
- MDIDVKVKIEDVETRKDPTSFLPEEPMSYEIKKKKKKKKKLQEDPFKDIDDKVEVKIEPMTLLDPEVTIKVENINVEFDFDNFADSGELLGGPEREESQEPVVKFEKENRDVVVPVSFESVLNNKATIENPDMLPNNELPLKQAPIHVCKVCHLVFQSTKTLRMHQKRKHKSFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPNSMPDDREERTCDICALVFKGMTRLRMHMRRKHGSFQESFQHICKDCGLTYDKYRSLIVHIQRKHSNKKPEINQWYNCPFCPKIFTKRETYARHVQRKHHLADGSIKQENLTDNYLEGCKNEETGEIACKECPLVFSSVNFLKLHMRRKHNALREDFRLKCRICNLSYDKVESLKRHVRRKHDKGSYCEVCNKQFDTREMYLNHSHMKVIKECNICGMIFASKGGLAKHLRCTHKIDTPKTVFCSMCDAGFFDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHIQFKHPTANNFNAPMQKCEQCNEKFKDEFELCRHVNVVHGRPEDMTKQEMYDIKKEEADIKDCFQCTKCSDTYLTWEQLKLHYEANHHNIEETQCQICGEILPGNELQKHIKTLHTDNDMHCRYCEFKTNVRVSLTQHMLRHKNAETIHCDYPGCRYKTFHERAMEKHKRKHADQGVKLQCTQCPFQSMNKYILKYHMEAHETGRKKYMCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- -
- 80% Identity
- -