Basic Information

Insect: Subacronicta megacephala
Gene Symbol: -
Assembly: GCA_958496365.1
Location: OY292529.1:5449000-5459474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.043 3.3 9.0 0.9 6 20 12 26 6 28 0.86

2 14 0.071 5.5 8.3 0.2 2 20 34 52 33 54 0.93

3 14 0.74 57 5.1 0.5 1 12 195 206 195 215 0.83

4 14 1.2 92 4.5 0.1 1 19 346 364 346 364 0.96

5 14 0.0001 0.0079 17.3 0.3 1 23 371 393 371 393 0.98

6 14 0.0028 0.22 12.7 2.0 1 23 407 429 407 429 0.98

7 14 0.25 19 6.6 0.3 1 10 454 463 454 475 0.70

8 14 1.3e-05 0.00099 20.1 0.3 3 23 483 503 481 503 0.97

9 14 0.0013 0.1 13.8 2.3 1 23 519 541 519 541 0.98

10 14 1.5e-06 0.00012 23.0 4.5 1 23 547 569 547 569 0.98

11 14 0.0031 0.24 12.6 6.2 1 23 575 597 575 597 0.97

12 14 9.4e-06 0.00073 20.5 0.4 1 23 603 625 603 625 0.98

13 14 0.00082 0.064 14.4 0.3 1 23 629 651 629 651 0.98

14 14 0.00021 0.016 16.3 0.1 1 23 659 682 659 682 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.043	3.3	9.0	0.9	6	20	12	26	6	28	0.86
2	14	0.071	5.5	8.3	0.2	2	20	34	52	33	54	0.93
3	14	0.74	57	5.1	0.5	1	12	195	206	195	215	0.83
4	14	1.2	92	4.5	0.1	1	19	346	364	346	364	0.96
5	14	0.0001	0.0079	17.3	0.3	1	23	371	393	371	393	0.98
6	14	0.0028	0.22	12.7	2.0	1	23	407	429	407	429	0.98
7	14	0.25	19	6.6	0.3	1	10	454	463	454	475	0.70
8	14	1.3e-05	0.00099	20.1	0.3	3	23	483	503	481	503	0.97
9	14	0.0013	0.1	13.8	2.3	1	23	519	541	519	541	0.98
10	14	1.5e-06	0.00012	23.0	4.5	1	23	547	569	547	569	0.98
11	14	0.0031	0.24	12.6	6.2	1	23	575	597	575	597	0.97
12	14	9.4e-06	0.00073	20.5	0.4	1	23	603	625	603	625	0.98
13	14	0.00082	0.064	14.4	0.3	1	23	629	651	629	651	0.98
14	14	0.00021	0.016	16.3	0.1	1	23	659	682	659	682	0.96

Sequence Information

Coding Sequence: atGGGAGGCCAGCCATTGAATTGTCCTTTATGTTGCAATAAGACTTTTAGATCTAAGCAATTACTAATTGAACATTTGTCGAATGCTTTCGAAAATGTATATTGTCCAGTTTGTAACGCCAAATGCACTTCTTTAACTCAACTTGTGGAACATTTATCTCAAGACAATTGTCAGTCAGATAATTCTGCGCATACTATAGTATTTGAGCAGAGCTCGCATGATAATGGTAATGAAAATGCACCACATAATCAAAACTCTGACATTAAAATGGCAATCCACAATGAGCATAGCTATGAAGTTCAGGTGGACTCTAACGAGGCTAACAAAATGTATGTGGAGCTATTTAGCAAGCAATTGACCAAGCCATGCCTCCAAACCCGAGAATTGAAACTGGTGAAAGAAAATGGAGAGAGTCGGTATATGATTGTCACTCAAGACAACGCTGAATTGAATGCAGAAAGCACTAttgttacaaaacaaaataatgatggCACCATATCTCTGACAACAGTTAAAGaCATGAAACTGGAGACAGATGTGGCACCCACAGAAGATGTGCCAGAAGATAATCCAGATGAGATTTACAGTTGTAACACATGCAAAGTGTCATTCTCATCAGTCATAGAGCATATTCAGAACTACCACAATGATCAGGATGTAGTTGTTGagGAACCAATGGACGAACCTGGGACGTTACCTATTGAATATGAAGCTTTGCAAAATGCAGATCAATCAGTATCTGGTGATAAACAGACACCGCGGCGCGTTATCACCGACACGGGTGATATTGTAGAAGAAccacttatttttaaatcagaAAATATTGCAATGCAACCTGACTCCTCAGaTGCTACATCACAGGATTCAATTAAACTGGTAGAGAGGTTCTCCAAACGTAAAAATGTCGCTAAACTATCCAACAATGTTGTCAAGGATGCTACACAATCTAATAAGAAAGaTAAAAGCGGAATAGCACGCAGTCACAAGGTAATAGTTAAAGAAGTACCGACAGACAGCGGCTTCTCAATCAAAATGTACCAGTgcttaaattgtaaaataagtGCAACCAATTTGAATGAATTCCAAATTCATCCATGTAAATCAGTAAAATATCCTTGCCCATTTTGTCCTGTGGCGTATGAAAACTCAAAATCTTTATGTGCACATATGAAAGCACACAAAGTAAAAACAGATTCTCCAGCATCTGTTCCCATTTCTTATGAATGTGGTATATGCTGTACAGTCTTCCCAAGTAACAAGTCCTTGAAACTACACAAACGAATGCACGATCCaataaaGTCTCGCCCCATAGAGCCGCCAATAGTGAATATAGACGGTTCTGAAGTAAGCGAAGGCAGATACCGTTGTAATATTTGCGGCAAAATGATCCCTGTGGACTACAGAACTATCCACCAAAACTCTCACAAAAGCTCGGACAAAATGAACTGTGGCATTTGCAATAAGAAGTTTACTTCTGAAGAATATTTGGAAATGCATATGAATGTACACAACGTGGATAAGGCGCCGGTGAATAATCAAGATCAATCTCTCCCATACAACTGTTTATATTGCAACAGAAGGTTTGCAAGACCGCATGAAAAAGTTAAACATGAAAGGATTCATACAGGTGAAAAGCCGCATTCGTGTGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTACACATGCGCACACACACCGGCGCTAGGCCCTACGCCTGTCCCCATTGCAACAAGAGATTCAAGGCGCACAGCGTCTACAACCACCATCTGTTGACCCATTCGGAGGTGCGCGCGTACAAGTGTCCTTTCTGTCCGAAAGCGTTCAAGACCTCCGTACAACTCGCCGGACACAAGAATTCACACACAAAGCCTTTTTCCTGCCAACAATGCAACAGGCCTTTCGCGTCTCTATACGCGGTGCGCGTACACACAGAAACGCACTCGCGGCAAAACAACCTCAAGTTCTCGTGTGAGTTGTGCGGCGCTAGCTACGCCAGGGCCTTCGCGCTGAAGGACCACATCAAACAGGCGCACAACCAAGAACAAACGCAGTCGCCGTTGAGAACGATAACCGGGGACGACGATTGGATGATGAAAGGTAGCCCAGATCCAGATGGCCTCAACAAAGATTTGACACATGATATGGACTTGGGAATGACTTCAAGTGAATTAATAGTTCCTTAA
Protein Sequence: MGGQPLNCPLCCNKTFRSKQLLIEHLSNAFENVYCPVCNAKCTSLTQLVEHLSQDNCQSDNSAHTIVFEQSSHDNGNENAPHNQNSDIKMAIHNEHSYEVQVDSNEANKMYVELFSKQLTKPCLQTRELKLVKENGESRYMIVTQDNAELNAESTIVTKQNNDGTISLTTVKDMKLETDVAPTEDVPEDNPDEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMDEPGTLPIEYEALQNADQSVSGDKQTPRRVITDTGDIVEEPLIFKSENIAMQPDSSDATSQDSIKLVERFSKRKNVAKLSNNVVKDATQSNKKDKSGIARSHKVIVKEVPTDSGFSIKMYQCLNCKISATNLNEFQIHPCKSVKYPCPFCPVAYENSKSLCAHMKAHKVKTDSPASVPISYECGICCTVFPSNKSLKLHKRMHDPIKSRPIEPPIVNIDGSEVSEGRYRCNICGKMIPVDYRTIHQNSHKSSDKMNCGICNKKFTSEEYLEMHMNVHNVDKAPVNNQDQSLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHTETHSRQNNLKFSCELCGASYARAFALKDHIKQAHNQEQTQSPLRTITGDDDWMMKGSPDPDGLNKDLTHDMDLGMTSSELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00018395;
90% Identity: -
80% Identity: -