Smeg024933.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292542.1:2677301-2681083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00068 0.053 14.7 2.3 1 23 33 56 33 56 0.95 2 22 0.0088 0.69 11.2 1.0 1 23 126 148 126 148 0.98 3 22 0.00014 0.011 16.8 0.7 1 23 152 174 152 174 0.97 4 22 0.017 1.3 10.3 0.4 1 23 178 201 178 201 0.93 5 22 1.5 1.2e+02 4.1 7.0 2 23 208 230 207 231 0.95 6 22 0.0062 0.48 11.6 0.3 1 21 237 257 237 258 0.92 7 22 0.017 1.3 10.3 1.7 1 23 295 317 295 317 0.96 8 22 0.35 27 6.2 0.4 2 23 346 368 345 368 0.92 9 22 2.6 2e+02 3.4 0.1 6 23 393 411 389 411 0.94 10 22 0.00039 0.03 15.4 2.6 2 23 417 439 416 439 0.95 11 22 0.00045 0.035 15.2 0.8 1 23 444 467 444 467 0.97 12 22 0.28 21 6.5 0.5 2 23 470 492 469 492 0.93 13 22 0.015 1.1 10.5 1.8 2 21 499 518 498 519 0.94 14 22 0.18 14 7.0 1.3 1 23 577 600 577 600 0.96 15 22 0.27 21 6.5 0.3 3 23 629 650 627 650 0.91 16 22 0.039 3 9.1 0.6 3 23 674 696 672 696 0.95 17 22 0.00013 0.01 16.9 0.7 3 20 703 720 701 724 0.90 18 22 0.01 0.79 11.0 0.4 1 23 729 752 729 752 0.97 19 22 0.0024 0.19 13.0 0.6 2 23 758 780 758 780 0.94 20 22 0.00014 0.011 16.8 4.8 1 23 784 807 784 807 0.97 21 22 0.0002 0.016 16.3 0.6 2 23 814 835 813 835 0.96 22 22 0.0057 0.44 11.8 2.3 1 23 841 863 841 863 0.97
Sequence Information
- Coding Sequence
- ATGACATCGACAAAACGCAACAGACTCATGAAGAGAAACGCTATTATCGTTATAGAAATGTCCACAGTCATTCCTTTCAAGTGGTTCAGACAAAACTACCTCTGTTTCTACTGCCATCTCGCTTTCAAAGATACAAATCTTCTTAAAGAACATATTAGAAAAGAACATCAAAAGTCTAACACTAAATCTGCTATTTTGTATTTGAGAAGAGACGAAAAAGTCAAAATAGATGTTTCAGTTATTGAATGTCGTTCTTGTAATGAGAAATTACTAAATCTAAACGCGCTAATAGAACATATAAAAGTGACTCATAATATGAAATTCACAGAAGAATGCGGCTACGGTGTCGTTCCGTACTTTCTCGAAAATGATGTGTTCCGTTGCGGGGTTTGTGAACAACAGTTCCAATATTTCGTGAAACTGAACCAGCATATGAATGAACATTTCGGGGATTACGTCTGTGAGGTTTGTGGGAAGTCGTTTTTAAGTCAGGACCGTTTGCGACGTCATTCTCAGTCGCACGGCTCAGGATTCCGGTGTAACACATGTCCGGAGACTTTCGACTCATTGGTACAAAAGAACAACCACGAAGCGAAGGCCCACAATAAAGATCAGCTCCTCAAATGCTACTTCTGCACCGAAACCTTTCAAAACTATTATCAGAGAAAACGGCACCACAATATAACTCACCACGTCAAAGTCCCAGAGTTCAGCTGTCCAGTGTGCAACAAAACCTTCCAAATTCTCAGCAAAATGAAGGTCCATTTAAgtAGTAAAGTGAAGAAGCACAATGGAAAAGAATCTTCTTCGATGAGGAGGCGAAGGAACCtacaaatattattcaacaacaCCTCTATTATCCCTTTTAAATGGCGCGGAAAGTATCTTTGCTTTTATTGCAGTAAAGATATTTCTGAATATTCTGAGTTGAGGAAACACACTAAATCTCATGGCGATTGCTCCATTAAAGACCATTCCCTGAAGGTCCTGAAAGGAGGACAGAATATGGAAATTAAAATCGATGTATCCGATATCTCTTGCGAAATTTGCTCTGAACATTTTCAGTCTTTCGATGAAGTATTAACACATTTGTTTGTGGAACATAAATTGGAGTATGATAAGGGCGTAGAAATGGCTATTGAAGCATATAAACTGGTAGATCTCAGTTGTATAGCGTGCGAAGAAAAATTCACGTATTTCGGCTACCTAGTCTCTCATGTCAATAATATTCACCCCAAAAACTGCCTCATCTGTGACAAATGCAATCAAAAATTCAACAAGAAAAGAGATCTTTTCTCTCACATGAAAAATTATCACCGAGAAGGAGGATACCAATGCGAAATGTGTCCACAAATCTTCACTTCTCTAAATGTTCTAAGAAAACATCGAAATAATAGGCATTTAACTCAATGTAATATCTGTCATTTAAAACTACCCTCTGCTGCATTGAAACAGAAACATATAAGCTTAGAGCATCCAGATGATGGCTCTCTTCAATGTGATACTTGTTCCAAAGAGTTTCATACCAAGCAAGGTCTCAGGATGCACAAAAGAAACTGTAAAGGGATCTTTGAAATTTCCGTCAAGATAGAAGAGTGCTTCAACACGGATTTAGATCAAAATTATGACGAAGAAGTTAAACGACCTAGTGTTAAACAAATCAGAGAAAATATAGTAATTGTAATCAATATGTCTACTGCAATACCTTTTAGTTTCTACAAGAATacgtttaattgtttttactgCTGTAAAGATTTCCCTGATCCCGATTTGATGAGGGAGCATACGCTTATGGAACATCCGATCTGCGATgtcaaacaaaaatgtattagaAAATGTAGAGAATCAGTTGCCTGCGTCAAAATCGATATTTCTTCTCTCGCTTGTAAGATTTGCTTCGAATCAATGACCGATTTAGACCATCTACTGGACCATTTAATCGATAAACACAATGCGAATTACGATAAATCGATCACAACGTGCTTACAGCCTTACCGGTTAATCAAAGACCATATGGCCTGTCCACATTGTCCCGGGGAAGTTTTTCGGTTCTTCGGAACCTTGCTCAAACATATGAACAACAaacatactaataataatataatttgcgTTTACTGCGGAAAGACTTTTCGGAGGGATCAGAATTTGCGTGTTCACATTTGGAGGCATCACCGAGATGGGAGGTTTAAGTGTAACATTTGTGGTGCTGAGTGTAATATACCGTCTCGTTTGTACATGCACATGGCTCGAGTTCACGGTGTTAAAGCCGCCAAATGTCCAAAATGCTCCGAAAAATTTGCTACTCAATATCTAAGACAAAAACACCTAATAGAAgctcatgattctggacacaaATGCACTTATTGTGGCAAATTATTTACCCGAAACTCTTTCATGAGGGACCATGTTAGACGGACCCATTTGAAAGAGAAGAACGTAGAGTGTTCCATCTGCAATATGAAGTTCTTTAACAATATTCTTTTAAGGAGGCATATGGTGAAGCATAGTGGGGAGAAGAATTTTCACTGCGATGTTTGCGGGGAGCGTTTCTTTTGGAGAAAGAGCCTTAGGACTCATATGGCTAGGCACAATAAGCATCTTAATTCCGTACAAATATGA
- Protein Sequence
- MTSTKRNRLMKRNAIIVIEMSTVIPFKWFRQNYLCFYCHLAFKDTNLLKEHIRKEHQKSNTKSAILYLRRDEKVKIDVSVIECRSCNEKLLNLNALIEHIKVTHNMKFTEECGYGVVPYFLENDVFRCGVCEQQFQYFVKLNQHMNEHFGDYVCEVCGKSFLSQDRLRRHSQSHGSGFRCNTCPETFDSLVQKNNHEAKAHNKDQLLKCYFCTETFQNYYQRKRHHNITHHVKVPEFSCPVCNKTFQILSKMKVHLSSKVKKHNGKESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDISEYSELRKHTKSHGDCSIKDHSLKVLKGGQNMEIKIDVSDISCEICSEHFQSFDEVLTHLFVEHKLEYDKGVEMAIEAYKLVDLSCIACEEKFTYFGYLVSHVNNIHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQIFTSLNVLRKHRNNRHLTQCNICHLKLPSAALKQKHISLEHPDDGSLQCDTCSKEFHTKQGLRMHKRNCKGIFEISVKIEECFNTDLDQNYDEEVKRPSVKQIRENIVIVINMSTAIPFSFYKNTFNCFYCCKDFPDPDLMREHTLMEHPICDVKQKCIRKCRESVACVKIDISSLACKICFESMTDLDHLLDHLIDKHNANYDKSITTCLQPYRLIKDHMACPHCPGEVFRFFGTLLKHMNNKHTNNNIICVYCGKTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMARVHGVKAAKCPKCSEKFATQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHVRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHLNSVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -