Smeg003073.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292515.1:2519024-2535787[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5 3.9e+02 2.5 0.9 2 23 266 287 265 287 0.87 2 21 2.1 1.6e+02 3.7 2.0 1 22 292 313 292 316 0.90 3 21 0.014 1.1 10.5 3.1 2 23 444 466 443 466 0.94 4 21 0.003 0.23 12.6 0.0 1 23 472 494 472 494 0.97 5 21 0.083 6.4 8.1 0.2 1 23 505 528 505 528 0.88 6 21 6.5e-07 5.1e-05 24.2 3.5 1 23 533 555 533 555 0.98 7 21 0.00041 0.032 15.4 1.0 1 23 561 583 561 583 0.95 8 21 0.0012 0.092 13.9 5.3 1 23 589 611 589 611 0.98 9 21 6.9e-07 5.4e-05 24.1 0.8 1 23 617 639 617 639 0.98 10 21 0.0021 0.16 13.2 3.8 1 23 645 667 645 667 0.98 11 21 0.0021 0.16 13.2 3.8 1 23 785 807 785 807 0.98 12 21 0.0021 0.16 13.2 3.8 1 23 925 947 925 947 0.98 13 21 0.0021 0.16 13.2 3.8 1 23 1065 1087 1065 1087 0.98 14 21 0.0021 0.16 13.2 3.8 1 23 1205 1227 1205 1227 0.98 15 21 0.0021 0.16 13.2 3.8 1 23 1345 1367 1345 1367 0.98 16 21 0.0021 0.16 13.2 3.8 1 23 1485 1507 1485 1507 0.98 17 21 0.0021 0.16 13.2 3.8 1 23 1625 1647 1625 1647 0.98 18 21 0.0021 0.16 13.2 3.8 1 23 1765 1787 1765 1787 0.98 19 21 0.0021 0.16 13.2 3.8 1 23 1905 1927 1905 1927 0.98 20 21 0.0018 0.14 13.3 2.8 1 21 1970 1990 1970 1992 0.95 21 21 1.7e-05 0.0013 19.8 3.6 1 23 1998 2021 1998 2021 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTGTATAATTCTAATGTTTGTCGATTATGTGGGGAAGAAAATGATAACGgaactttattatattcaagTGAAGAAAATAGTCAAAACTTAAGTGAAGTGATTAACACATATTTACCAATCAAGGTGTCCGATGATGGCCAACTGCCTCGGACAATTTGTCCAGGATGCACCATACAATTGGAAGCCACCGTAGAGTTCCTAACTCTTATTATAAATGGacaaAAAGTTATTCGCGAACTTCATCTCAGAgaaaaagaatacaaaaaaaccATGCTGAATCCTCCAAATGAAGAAGATATAATCacagacaaaataatttatgaagTTAACACAAGCAATGGAGTGTACCAAGTTGAGCACCCGATTGCCTTACAAGTTGCCGGACTTGAAAAGCCAAAGCGAAAGCGTGGAAGACCACCAAAAAAGCCTAAAACTCCTGAGGAGTTGGCCCAAGAAGCTGCTGCTAAAGAGCAGGAGGTAAAAATGGCAAGAAAGGATGATAAAGAAGTTGAGCCAAGTGGAAAACGGAGAAGAAAAACTCCAACAAGATTTCGAGAAGCAGTAcagGGTAAAGAGCTTGAGAGGATATTTAAGGAAGAAGGAGTGACAGATGGAGAAGATAGTGAACCTGAGATTAAACTGGATACTTACCAAGGAGTGAAGCCGCCAGTGTCTAAAGAGCCTCAAATTATAGGCCACCTAGAGGAATCGGGCGAACTGGTTGTTATGGTCAAAGGGAAAGGCCGTGGAAGACCTAGAGGCCCAATGCACATGTCCCGGAAAGAATGTGGAATTTGTGGAATGGAGTTCACTTGTAAGGGACGATACATGTCGCATGTGGCCCAACATGGTCAAGTGCTATACCAATGTATAGAGTGCTCAGATACTTTCACTACCCGGCTACACTTCAACAACCATCAGAATGAAGCCAGACATAGTGGACAGAATATTATTCCATGCAAGAAGAACAATGAAAAAGTTAAAACTAAGAAAAACGAAAACCCTGAAACAACTATAATAAGAGAGGAGCCAGAACCAGCTAAACTTGAATCCCCACCTGTGCAAACCATAGATAATGTGATATTACCGTTACCAAACTCCTTGCCGGATTTAAATCCACAACCCATAGTTGTAGATGATGTAGTGCCAAGCGTGGAGTTCCAGTTGAAAACTGATATTCCTACTATTGAGGATCCTCCTCCCGCAACTGTTGATAGTGTTGAGAAAATTGCTGACTCATCCCAAGACACAACTGAGGCCGAAAAATCTGATGAAGCGGAAAAAAATACAACGACGCGTCGTGGTAAAGTTCGACTCAAGTGCAACCACTGTGACAAGACGTTCGGCAGCAAACAGAGCAAGTCCATGCATATTAAGGCGACGCACCAGGGCGAGCGGTCGTACGTGTGCGGTGAGTGCGGCGCCCGCTTCGCCTACCCGCGCTCGCTGGCCCTGCACGCGCTCGTGCACCGCCGGCACCGCGCCAGCAAGGGGAAGGCCTTCGCCTGCGACCTCTGTGGAAAGGTCCTAAACCACCCATCATCCGTGGTATACCACAAGGAGGCAGAACACGCCGGCCAACGATACGTGTGCAACAAATGTGGCAAGTCGTTCAAACACAAACAGTTGCTGCAACGACATCAGTTGGTCCATTCACAGGACAGGCCCTATAACTGTAAGCTGTGCAACGCGACCTTCAAGACGAAAGCGAACCTTTTGAACCACTCTCTCTTGCACTCCGGCGTGAAGAAGTTCTCGTGTGAGCTGTGCAAGCACAAGTTCGCGCATAAGACGAGCCTTACACTGCACATGAGATGGCATACCGGCTTGAAGCCGTACTCGTGCACGACGTGCGGCAAGAGCTTCAGCCAGAAGGGGAACCTGTCGGAGCACGAGCGCATCCACACGGGGGAGAAGCCCTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGCACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACACCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGTACAGGTgcaggtacaggtacaggtacccTTCCAGTGCAGCGTGTGCCCGCGGCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCCCCCACGCCTGCACACACCCCCCCAACAGGATGGTATCCCGCGGGGCGTGGGCGACAAGATCGCGGCGCAGTGCGggggcgggcgcgggcgcgggggcgggggcgggggccgCCCACCGCTGCCCCACGTGTGGGCGTGGGTTCTCGGAGCGCTGGGCGCTGCTCAAGCACCAGCGCTGCCACACCGGCGAGCGCCCCTTCCGTTGTCCGCACTGCCCCCGGGCTTTCGCAGACTGCTCTAATCTCAATAAACACAAGAAGCAAGTCCACAAACAGATCAGTCTACTTGCAACCACGAACCAACAACCGCTACCGTCTCCCATAATACCAAAGATAGAACTGCCAGAGACACCACAAATACAGCTGGAGGTGGAGCAAACCATCGCTATCCCGGAGCCCTCGCCCATCAAGCTGCTGGATGAGAGCCAGGACGAGCTAGAGGAGCGGGTCATATACGTCACTTATGACGTCGACGACGCTGAGTCGCCTGCCTTCCATATACTAGACCCTGAACAGGCTGCGAGTCTAGCCGACGGCAAGGTGCTGACGACATGCGAGCTGTACTCGGGCCCGTCGTTACTGGTGCCACAGCCAGAGTACGAACAGTTAGAGCTCCTGCAAGACGAGCAATTGGAGTTGCAGGACGAGCAGTTGGAGTTGCAGGAGGAGCAGCTGGAGTTGCAGCACGAGCAGGAAGAGCTCGATCCAATGTCGGAACAGCTCGTTTCAGATGGACACGAGCAAATGCCTgTAACAGATGAGCAAGGCAATCCGTTACACTTCACGATGCAAGACGGCACACGGCTCGCTATAACGTCTGCCGATGGAAAATCTTTACAAGTAATAACACAAGATGGCCAAACAATACCAGTTGAGATTAATGGATACGCAGATGATGAGgAGGTTGACAACCCGGACACAATTGTACATCAGCTCAACTTACAAAAGAGTATTGAATCCAACGTGGCGTCGCCTGTTActcattattttacaatagtttaa
- Protein Sequence
- MEVFLYNSNVCRLCGEENDNGTLLYSSEENSQNLSEVINTYLPIKVSDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKKTMLNPPNEEDIITDKIIYEVNTSNGVYQVEHPIALQVAGLEKPKRKRGRPPKKPKTPEELAQEAAAKEQEVKMARKDDKEVEPSGKRRRKTPTRFREAVQGKELERIFKEEGVTDGEDSEPEIKLDTYQGVKPPVSKEPQIIGHLEESGELVVMVKGKGRGRPRGPMHMSRKECGICGMEFTCKGRYMSHVAQHGQVLYQCIECSDTFTTRLHFNNHQNEARHSGQNIIPCKKNNEKVKTKKNENPETTIIREEPEPAKLESPPVQTIDNVILPLPNSLPDLNPQPIVVDDVVPSVEFQLKTDIPTIEDPPPATVDSVEKIADSSQDTTEAEKSDEAEKNTTTRRGKVRLKCNHCDKTFGSKQSKSMHIKATHQGERSYVCGECGARFAYPRSLALHALVHRRHRASKGKAFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCNATFKTKANLLNHSLLHSGVKKFSCELCKHKFAHKTSLTLHMRWHTGLKPYSCTTCGKSFSQKGNLSEHERIHTGEKPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQAQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTHPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRYRCRYRYRYPSSAACARGASPRPASTACTCAATPPTAPTPAHTPPTGTGAGTGTGTLPVQRVPAALHHVQPAPPARAPPRRRPPPRLHTPPQQVQVQVQVQVPFQCSVCPRRFTTSSQHRLHVRRHAADRPHACTHPPNRMVSRGAWATRSRRSAGAGAGAGAGAGAAHRCPTCGRGFSERWALLKHQRCHTGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLATTNQQPLPSPIIPKIELPETPQIQLEVEQTIAIPEPSPIKLLDESQDELEERVIYVTYDVDDAESPAFHILDPEQAASLADGKVLTTCELYSGPSLLVPQPEYEQLELLQDEQLELQDEQLELQEEQLELQHEQEELDPMSEQLVSDGHEQMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGYADDEEVDNPDTIVHQLNLQKSIESNVASPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -