Smeg014924.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292528.1:2038565-2039410[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-07 0.00021 21.6 0.0 1 35 8 41 8 49 0.90 2 2 10 7.3e+03 -2.5 0.0 32 37 168 174 167 176 0.85
Sequence Information
- Coding Sequence
- ATGGCGCCGGTGAAAAATTATACCCAAGATCAAATGGGCCGTGCTATGGAGGCGGTGCGAAAGGGAGATAGTGTGTCGTCTGCGGTCAAAAAATTTGGTGTACCGCGCATAACCTTACTAAACAAAATTACAGGTAAAAGTCCTGCAATATCTTCCATGGGTCCTTCGTCAATACTAAATACTAACGAAGAAACAATTTTGGTTGAATGGTTATTTGAATTGTCCAAGAGTCACTGCCCAGTAGCTAAGGAGCAGCTTTTGGACAGCGTTCAATTAATTGTTAAGTCCGATGGAAGGGAGACACCTTTCACTCAGGGTAGACCAGGACGAAAATGGTATCAAGCTTTTCTTAAACGCCATCCCGAAGTGTCAGAACGAATTACACAAAATTTGACTACATCAAGAGAAGCTGTGACTGAAGGACAAATCATTAAATGGTTTTCTGAAGTTCAAGgAACTGCTCTGAATGACGCATTACCACCTGAGGATTTGGCTTTATATACACTTTGGGCTAAGTATAAACATATATGCCATTCTAATAGGGTAGACAATGACGAATTCGAAATTCAAGAAAAGCCAATAGAGCTAGTAGAATCTTAA
- Protein Sequence
- MAPVKNYTQDQMGRAMEAVRKGDSVSSAVKKFGVPRITLLNKITGKSPAISSMGPSSILNTNEETILVEWLFELSKSHCPVAKEQLLDSVQLIVKSDGRETPFTQGRPGRKWYQAFLKRHPEVSERITQNLTTSREAVTEGQIIKWFSEVQGTALNDALPPEDLALYTLWAKYKHICHSNRVDNDEFEIQEKPIELVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -