Smeg015323.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292528.1:6371698-6376030[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-08 5e-05 23.6 0.0 3 37 90 124 88 129 0.93 2 2 0.78 5.7e+02 1.0 0.0 22 30 215 223 201 224 0.76
Sequence Information
- Coding Sequence
- ATGAAGCATTATGAGTTAGTTACGGTGACTTTTGGTACTGCATCGGCACCATATTTGGCGGTACGTGCTTTACAACAAGTGGCATATGATGAATGTCAGAACAATCCAGACATAAGGGACATAATTCTGAAGGATTTCTACATGGATGATTTGATGACTGGTGCAGGAAATGTAGAAAATGGGTTCAACatctataaagaaataaatagaacATTAGCAAAGGATAGATCATGTCTAGGAACAACGTTACGAGCATCATGGAGTGCAGATGATTTAGATAAGGCGATGTCTTGTGTTCTTGGCAAAGAAATGGGTGTTAATGAGGCATCCAGAAACTTTGCCATACCGTCTCGAACCCTAAGAAGACACATTTTATCGGGACAATCAAAAGGTTTTTTAGGACGCAAACCAGTATTTTCTGTTGAACACGAGAAAAAACTGGTTGcccatataaaaaaactggaaaAAGTTGGATTTGCCCCTGACCGAAAAGATGTAAAAGAAATGGCATATCAACTAGCTAAAAAGCTCAATATTAAAAATCCATTCTCAGCAAGTTCAGTATCAGCTGGAAATGTATGGTTCTCGGGATTCATGGCTCGGAATACAGAATTAAGCCAAAGAAAATCAGAAGGCCTGTCACTTGCTCGCGCTTATGGAGTTAATAGAAAAGATGTACAAGATTTTTTGGATTTACTAGCCAAAATCTACGAAGAAAACGATTTTGCTAATCACCCTGGGGATATTTATAACATGGACGAGTCAAGTAAGCTATTCATCGTCTTCTGA
- Protein Sequence
- MKHYELVTVTFGTASAPYLAVRALQQVAYDECQNNPDIRDIILKDFYMDDLMTGAGNVENGFNIYKEINRTLAKDRSCLGTTLRASWSADDLDKAMSCVLGKEMGVNEASRNFAIPSRTLRRHILSGQSKGFLGRKPVFSVEHEKKLVAHIKKLEKVGFAPDRKDVKEMAYQLAKKLNIKNPFSASSVSAGNVWFSGFMARNTELSQRKSEGLSLARAYGVNRKDVQDFLDLLAKIYEENDFANHPGDIYNMDESSKLFIVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -