Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.3e-06 0.0031 17.9 0.0 16 40 8 33 2 37 0.76

2 3 1.3e-11 9.1e-09 35.6 0.1 1 44 108 151 108 152 0.94

3 3 7.2e-10 5.2e-07 29.9 0.0 1 38 180 217 180 224 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.3e-06	0.0031	17.9	0.0	16	40	8	33	2	37	0.76
2	3	1.3e-11	9.1e-09	35.6	0.1	1	44	108	151	108	152	0.94
3	3	7.2e-10	5.2e-07	29.9	0.0	1	38	180	217	180	224	0.91

Coding Sequence: ATGGATGCTGTTAAACAAAGGAGATTGTCACTGCGCGAGGCCGAAGATCGGTATGGTGTGCCCAGACAAACTCTATCCGACCACTTGAAATCTGGAAACATCATGAAACGTTTGGGAAGACTTTCAATAATGAACGAAGTGCAAGAGGAAGCCTTCGTCAACAGCATAATACAATTCTCAAAGTGCGGAGTTTCTCTAAATCCGAAAATAATTCGGAAACACGCTTTTGATTTTTGCCAACAAAATAGTATAAGACATAAGTTTAACATCTCTACGGGCCTCGCCGgatcagttcaaaaatattatcagCGTGCTCTGTGGACTGAAGAGAACCTACGTGCTGCTATGGAAGCTGTGACCCAAAAAAAACTATCACAAAGAGCTGCATCAGACTTTTATGGAATCCCTAAAGCAACGTTAATTAATCACTTAAAAACGGGAAGCACCAAAAAACTCgttaagaaaatattgaatcaaTCGAAACTTGGGATACCCCTTACACTTTGGATGAGATTGCCTTTAAAGCGAGCCACGTGGACAGAAGAAAACTTACGAGCCGCAATGGTCGCAGTAATTAAGGACAAAATGCCTCAGCGATCTGCCGCAGATTATTATGGCATTCCGAGACAAACTTTAGCTGATCATTTATCAAAAGGAAGCATTGTAAAACGCATGGGACGCCATTCAATCCTAAACGAAGCACATGAAACTTATCTTCTTAATAGATTTAGGAAACTATCTAGTAATGGAGTAGCAATAACTCCACATTTAATTTGTAGGCAAGCGTTCTTGTTTtgcgaaaaatttaaaattaaacataatttcaaCGTCGAATCGAGACTTGCCGGCAAAAAATGGCTGAAGAGGTTTTTGAAACGGCATCCTGATGTATtgaatatttaa
Protein Sequence: MDAVKQRRLSLREAEDRYGVPRQTLSDHLKSGNIMKRLGRLSIMNEVQEEAFVNSIIQFSKCGVSLNPKIIRKHAFDFCQQNSIRHKFNISTGLAGSVQKYYQRALWTEENLRAAMEAVTQKKLSQRAASDFYGIPKATLINHLKTGSTKKLVKKILNQSKLGIPLTLWMRLPLKRATWTEENLRAAMVAVIKDKMPQRSAADYYGIPRQTLADHLSKGSIVKRMGRHSILNEAHETYLLNRFRKLSSNGVAITPHLICRQAFLFCEKFKIKHNFNVESRLAGKKWLKRFLKRHPDVLNI

Sequence clustering based on sequence similarity using MMseqs2