Basic Information

Insect: Sturmia bella
Gene Symbol: -
Assembly: GCA_963662145.1
Location: OY759172.1:26995923-27000998[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.7e-05 0.005 17.6 1.6 2 19 13 30 12 32 0.95

2 16 0.067 4.4 8.3 0.6 2 23 74 96 73 96 0.94

3 16 0.068 4.5 8.3 0.5 5 23 106 124 103 124 0.93

4 16 0.006 0.39 11.7 0.9 1 23 130 153 130 153 0.96

5 16 0.035 2.3 9.2 5.5 2 21 161 180 160 182 0.94

6 16 4 2.6e+02 2.8 0.1 1 20 191 210 191 215 0.84

7 16 0.41 27 5.9 4.3 1 22 232 253 232 256 0.91

8 16 0.002 0.13 13.2 6.1 1 23 261 283 261 283 0.96

9 16 0.27 18 6.5 0.2 1 23 299 324 299 324 0.96

10 16 0.018 1.2 10.2 1.3 1 23 335 358 335 358 0.96

11 16 0.00018 0.012 16.4 6.5 2 23 364 386 363 386 0.96

12 16 0.0002 0.013 16.3 2.3 2 23 390 412 389 412 0.95

13 16 0.071 4.7 8.3 5.2 1 23 418 441 418 441 0.94

14 16 0.00021 0.014 16.2 0.2 1 23 446 468 446 468 0.98

15 16 0.00065 0.043 14.7 3.8 1 23 474 496 474 496 0.98

16 16 0.28 18 6.4 0.4 5 23 512 531 502 531 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.7e-05	0.005	17.6	1.6	2	19	13	30	12	32	0.95
2	16	0.067	4.4	8.3	0.6	2	23	74	96	73	96	0.94
3	16	0.068	4.5	8.3	0.5	5	23	106	124	103	124	0.93
4	16	0.006	0.39	11.7	0.9	1	23	130	153	130	153	0.96
5	16	0.035	2.3	9.2	5.5	2	21	161	180	160	182	0.94
6	16	4	2.6e+02	2.8	0.1	1	20	191	210	191	215	0.84
7	16	0.41	27	5.9	4.3	1	22	232	253	232	256	0.91
8	16	0.002	0.13	13.2	6.1	1	23	261	283	261	283	0.96
9	16	0.27	18	6.5	0.2	1	23	299	324	299	324	0.96
10	16	0.018	1.2	10.2	1.3	1	23	335	358	335	358	0.96
11	16	0.00018	0.012	16.4	6.5	2	23	364	386	363	386	0.96
12	16	0.0002	0.013	16.3	2.3	2	23	390	412	389	412	0.95
13	16	0.071	4.7	8.3	5.2	1	23	418	441	418	441	0.94
14	16	0.00021	0.014	16.2	0.2	1	23	446	468	446	468	0.98
15	16	0.00065	0.043	14.7	3.8	1	23	474	496	474	496	0.98
16	16	0.28	18	6.4	0.4	5	23	512	531	502	531	0.83

Sequence Information

Coding Sequence: ATGTTTGCTCAATTTTTCAGTGTAACAATTTATGGCAAATGTCCCGACTGTCAGAAGtcattttcaaacatttacGATCTTAATAAGCATTCTTGTTGCCgtaacattaaaagaaaaactggtTCACCAAATTACTGTCAGTACTGTGATATGGATTTTCAATCTTTAAAAAGATACGTGTTTCATATGCAGTTTCATCTAACAAATCATCGTCCCAAAGTCTGCTTACTGTGTGGTGCTTTATTTAAGACATCCAACGATTTTTTCGAACATACTCAATATCAACACGAACCTGAAACTGCTATGGCTTGCATTAAATGTGATCGCTTTTTTAGGGACAAGGATGTGTTTGACCAACACATAAGCTCCCACGATACAAAGTACCAATACAGCTGCACTAGTTGTCCGAAAAAGTAcaccaacaaatttattttagctcaaCACATggaCGTTTATCATTCTAATAGGCCCAGTACCATGAAATGTCAACACTGTGAAAAAGAATTTGTAAGCAGAATATCGTTTCGTAATCACTTGAAATGTCATGATGCTGATGTTGAAGTGGAAGCTTTTATATGTGCAACATGTGGCATTGTAACCAGCAGTATGGAACGTATTAAGTATCATATCGAATTCGATGAACATTCACCCTGCTTTGGATcacaaaccgaagaaaaaatCATAAGTATGGTTTATACGTGCGAAAATTGTTCTCTCGATTATCATACAATAAAGCATCTTAAACAACATCGCCTGAGTACAAACCACAGTGACGAGTTGTTTGTTTGTGGCATATGCcggaaaagttttaaaacattaCGTCATATGCGCAATCATCATACTAATCACAAGGACTTGGACGAATGGGAGGCATTATTTCCTGTAACACGCTATTTTGTGTGCAATATTGGAGACTGCCAAGAGTTCTATCCAATTTGGACCACATTATACTATCACAAAAAACGTCCACATAAAAGAAAACCCTCAAACTGTGCTGACGAGTTTAAATGTCAATTCTGCCAACAAATTTGTCCGACAAAGATGTCCTTGGCGGTGCATGTAGCAAGAAGCCACAACAACTcaAATGTTAAATGTTCGCATTGCAAACGTAACTTTAAATCCCAAAAGCATTTACAACAACACATTGACAGATATCATACGCAGGTTGAATGTGATATTtgcttcaaaaaatttaaacatcgCCGCAATCTAGAGTCGCACAATAATATGGTACATCTCAGTATAAAACGTTACTTTTGCAAGCATTGCGGCAAAGgatattttcataaaagtgAAAAGGATGTGCACGagaaaaaagtgCATCCCAAAATTTCCTACAGTTGTGAACTGTGCGATTTTGCTACTACTTATCCCGAGTCCTTGCAAGTTCATATGGACAAGCATAACAATCAACTGAAATTCAAGTGTACAATCTGCGATAAAGGATTTGGACGAAAACAACTTCTACAGTGTCACTTAAAGaggcatttaaataaaaaagattttatttgcaGCGATTACTCGAAGGAGGAAGGCTGTGACTCTACATTTCTAACTTACAATCTTTTGAAGAACCACATTAAAACTAAACATCCAAACTCAACTTTTAGCAATAATTTGAAAAGCGAATCGAAGTTAAATGTAGTTATTAAAGATTATACAGATGCGGATGAAATTGAAGACAACTCCTTTGAATTGTGGATGGAAGATGACACTACAAGCGAGACGGCCAATAATAATGTAGATTTTGATCAGGATCCCattgaattgatttttgaaGAAGATGATGTGCAATTTGATgagcaataa
Protein Sequence: MFAQFFSVTIYGKCPDCQKSFSNIYDLNKHSCCRNIKRKTGSPNYCQYCDMDFQSLKRYVFHMQFHLTNHRPKVCLLCGALFKTSNDFFEHTQYQHEPETAMACIKCDRFFRDKDVFDQHISSHDTKYQYSCTSCPKKYTNKFILAQHMDVYHSNRPSTMKCQHCEKEFVSRISFRNHLKCHDADVEVEAFICATCGIVTSSMERIKYHIEFDEHSPCFGSQTEEKIISMVYTCENCSLDYHTIKHLKQHRLSTNHSDELFVCGICRKSFKTLRHMRNHHTNHKDLDEWEALFPVTRYFVCNIGDCQEFYPIWTTLYYHKKRPHKRKPSNCADEFKCQFCQQICPTKMSLAVHVARSHNNSNVKCSHCKRNFKSQKHLQQHIDRYHTQVECDICFKKFKHRRNLESHNNMVHLSIKRYFCKHCGKGYFHKSEKDVHEKKVHPKISYSCELCDFATTYPESLQVHMDKHNNQLKFKCTICDKGFGRKQLLQCHLKRHLNKKDFICSDYSKEEGCDSTFLTYNLLKNHIKTKHPNSTFSNNLKSESKLNVVIKDYTDADEIEDNSFELWMEDDTTSETANNNVDFDQDPIELIFEEDDVQFDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -