Sbel003949.1
Basic Information
- Insect
- Sturmia bella
- Gene Symbol
- -
- Assembly
- GCA_963662145.1
- Location
- OY759168.1:89759412-89780912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4 2.2e+02 3.0 1.8 1 23 266 296 266 296 0.85 2 11 0.0016 0.1 13.5 0.4 1 23 302 325 302 325 0.95 3 11 3.9e-05 0.0025 18.5 2.2 1 23 330 353 330 353 0.95 4 11 2.5e-05 0.0016 19.1 4.5 1 23 358 380 358 380 0.97 5 11 0.00034 0.022 15.6 2.0 2 23 387 408 386 408 0.96 6 11 0.0015 0.1 13.5 2.8 2 23 416 438 416 438 0.95 7 11 0.017 1.1 10.3 1.3 1 23 444 467 444 467 0.95 8 11 0.0041 0.27 12.2 0.9 2 23 478 500 477 500 0.93 9 11 2.6e-07 1.7e-05 25.4 0.7 1 23 528 550 528 550 0.98 10 11 6.9e-06 0.00045 20.9 2.3 1 23 557 579 557 579 0.96 11 11 0.00017 0.011 16.5 0.2 2 23 586 607 586 607 0.97
Sequence Information
- Coding Sequence
- ATGGAAACTTGCCGCACTTGTGCCAAATGTGATTTTGATAATGAAAGCCAATGGCTTGATTTATTCAATGCTCCTCGTTGGCAACTTGAAACGCAGCGTATACATTTGGAATTGAGTGCTTGGAAGATTAAgATATCATGTAACGATGGATTGCCGCAAAAAATTTGCACcgactgtttttcaaaattttgcacagTGTCCTCATTTCGTTTGCAATGTTTGgaagcacaaacaattttaaacaatatcTTCGATAAAATCGATACACAAAGTATACAGGATGGCGAAGAGGAAGAAGAACAAGTGTTTGAGGGGTTTGCTGATGAGCAGGATAAGAATGCACAAACAGCAGCACACTCACTCACAGCTGCTAAAGAAGAAGCAgcgacaacaacagcagcagcagcagcagcagcagcaataacaGTACGTTACACTGCCCgtttaaaaaacgaaaaccaaaacaaacacCAAAACTTTAGTAACATATTCGAAGAAGTAGAAGAAGACATAAATAACAACACGGACAACATTGTTCGGAATGTTGAAGATGGCGCCAGTAATACAactatttttcataataatgaAACCACAACGCTACGAGAAGATACCAACGATTTAGATGAAAATGATCTTATTGAAGAGCTTATCGAAGAACTAGATATCATTGAGGAAATCGCTGAAGAGCACGAAAATGGATTTTTTAATGATGAGACCCAGCCTACTGGAACTATTATTTTGTCCCCAGCCACAAACAACGAAGACGATCTTTTAGccgataatttaaaaataacattcgAATGCAAATATTGCTACAAATGGAAGAATAGCAGTTCGGAAATTTTTCAAACCCAACAAGAGCTGTTGGCCCACATAACGAAACTACACAGCTCAGAGCTACCATATAATTGCCCTTATTGCCAGCAAACATTTATGGATGCAGCGTCCAGAACCACACATTTGAAGGAAGAACACAGTCAAAAGGTGCATGAGTGCGAAACCTGTGGCAAGAAATATGccgacaaatttaatttaaaaaatcacgTTGAAAAGTATCACAGTGGCACTGATTTCGATTGTACACTCTGCGATAAGAGTTTTTGTTCGAGAAAAAGTTTGAATTACCACATGAAATGGCATAATCCTAAAGAGCAATTGAAATGTGCCTATTGTGATCGTTTGTTTATCAATCAAAGACATTTGAAAAGTCACGAAGAGACCCATACGGGTTTTCGTAGTCACGAAGTTTGCTCCTTTTGTGGAAAAAattttttccacTTGAAAACTCTTCGATGGCATATTTATCGCCAGCACGGAGGCGAAAAACCATACAAATGTGCTAGATGTACAGAAGTGTTTACATCTTATTTTGAGAAACGAATCCACATGCTCGAATTTCATTTAGACAATTTAACACTAATCGAAAAAACTGAATGTATGCTGTGTCACAAACGTTACGAAAATGAACAAGAACTTAAGGAGCATATGTTGGATGATCATAAGGAAAATAAAGGTGCGGTTAAAATAGCGAACAACAAAAGAGTCATTATGAATAAAAAGCCAAAAAGTTTTACCGGAATATTTCAATGTGAAAAATGTGACAAACGATTTAACATGAAGTCTGCTTTAGAAAGGCACATGGCTGTGCATTCCACAGAGGGAAGaCCTCATGCATGTCCACAATGCCCAAAACGTTTCAAACGCTCTCAAGACATGAAATGGCATCTGAAGACGCATTCATCAGAGAAACCAAATGTCTGTGATGTCTGCGGTAAAGGATTtgccttaaaatatgttttaactcAACACCGCAGAAGTCATGaagtgtaTGCTGACCAGAAACAAAACGTAAGGAAGAAGCTTTCCTTTGATAAATCGTCAATTAAACGCACAGGTGGGGGCCCTTACAAAGAGAGAGTTTTAACCCAAGTAGAGGAACAAATAATGGTTGCAGCAGGCATTAATGTAGCTATTGAGGGTCTAACGAATGTCCGAAGCTTTCGCACCGAAAATTATAGCACACCAGCTAAGGAAAATGATGTTTCAATAGCATCCCATGAAAGCAATGAAGCTTCATCTCTCTCCCCCTGCTTAGGTTTCTCTAGCGAAAATCAAATACATGACGATTTCGCCTCGATTATGGAAATTTATGGTGAGGAGGAGACATTAGATGAAACTAGAACTAGCTTGAAACATCGATACTTAGTCATATCTAATAGTCTTTTAGCAGACTAA
- Protein Sequence
- METCRTCAKCDFDNESQWLDLFNAPRWQLETQRIHLELSAWKIKISCNDGLPQKICTDCFSKFCTVSSFRLQCLEAQTILNNIFDKIDTQSIQDGEEEEEQVFEGFADEQDKNAQTAAHSLTAAKEEAATTTAAAAAAAAITVRYTARLKNENQNKHQNFSNIFEEVEEDINNNTDNIVRNVEDGASNTTIFHNNETTTLREDTNDLDENDLIEELIEELDIIEEIAEEHENGFFNDETQPTGTIILSPATNNEDDLLADNLKITFECKYCYKWKNSSSEIFQTQQELLAHITKLHSSELPYNCPYCQQTFMDAASRTTHLKEEHSQKVHECETCGKKYADKFNLKNHVEKYHSGTDFDCTLCDKSFCSRKSLNYHMKWHNPKEQLKCAYCDRLFINQRHLKSHEETHTGFRSHEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFEKRIHMLEFHLDNLTLIEKTECMLCHKRYENEQELKEHMLDDHKENKGAVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACPQCPKRFKRSQDMKWHLKTHSSEKPNVCDVCGKGFALKYVLTQHRRSHEVYADQKQNVRKKLSFDKSSIKRTGGGPYKERVLTQVEEQIMVAAGINVAIEGLTNVRSFRTENYSTPAKENDVSIASHESNEASSLSPCLGFSSENQIHDDFASIMEIYGEEETLDETRTSLKHRYLVISNSLLAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -