Basic Information

Insect: Sturmia bella
Gene Symbol: -
Assembly: GCA_963662145.1
Location: OY759168.1:112260497-112262479[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.043 2.9 8.9 0.1 1 23 294 317 294 317 0.92

2 10 0.048 3.1 8.8 2.0 1 23 327 350 327 351 0.96

3 10 0.0093 0.61 11.1 0.2 2 20 357 375 356 377 0.93

4 10 7.4e-05 0.0048 17.7 2.3 2 23 390 412 389 412 0.95

5 10 0.00042 0.027 15.3 6.2 1 23 420 442 420 442 0.98

6 10 7e-05 0.0046 17.7 2.0 1 23 448 470 448 470 0.97

7 10 0.00022 0.014 16.2 1.0 1 23 476 498 476 498 0.95

8 10 0.035 2.3 9.2 3.0 1 23 504 526 504 526 0.98

9 10 1.4e-05 0.00093 19.9 1.7 1 23 532 554 532 554 0.98

10 10 2.7e-06 0.00018 22.2 1.6 1 23 560 583 560 583 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.043	2.9	8.9	0.1	1	23	294	317	294	317	0.92
2	10	0.048	3.1	8.8	2.0	1	23	327	350	327	351	0.96
3	10	0.0093	0.61	11.1	0.2	2	20	357	375	356	377	0.93
4	10	7.4e-05	0.0048	17.7	2.3	2	23	390	412	389	412	0.95
5	10	0.00042	0.027	15.3	6.2	1	23	420	442	420	442	0.98
6	10	7e-05	0.0046	17.7	2.0	1	23	448	470	448	470	0.97
7	10	0.00022	0.014	16.2	1.0	1	23	476	498	476	498	0.95
8	10	0.035	2.3	9.2	3.0	1	23	504	526	504	526	0.98
9	10	1.4e-05	0.00093	19.9	1.7	1	23	532	554	532	554	0.98
10	10	2.7e-06	0.00018	22.2	1.6	1	23	560	583	560	583	0.98

Sequence Information

Coding Sequence: ATGGTTGGATTGTGTCGTTTATGTGCTTCCCTTCGTAAAATCGATGTCTTAACTATTGTAAAGGACAATTCAAGTGAAATATGTGACAAATTACGCAAATGCTGTCAACTCGATATAACAATAGACGATGGTTTGCCCAAGTCTATATGCCAGGAGTGCATTTCCCACTTAAATAATTCGCATATATTTTACACAAAGGTACAAGAGGCACAAGAGACATTGCAAGCCTTGTATCCTTCGCAAGTCAACAAAACCGTCCGTAACTCACTACAACAATATCTGCAAGCGTACGACGAAATTGACCGATTTCCCACAAAGCCGGCCGAAACGGATGCTgccaaagaatataaaaatatagagAATAGTTCACAGCATATTAAGTTAGCTAATAACTTATTTAAAGAGTCTAAAAATAATCCAAATAAATTGAGTACCAGAAAAGCCGAAGAAGTTGGCCAAATTGAGAAAAGCGCACCAGAGTTGAAGGTATCTGAAGACTCTTGtgaaacaatacaaaatattgagGATCTAAAGGAAGGTGGGAAAGAACTTCAAGGTCCTCACGCTGATAGTGTTGATGATCTATATCAAGAAGATCTAGCAGAAGAACCGAATTTAAAATACAGCGAAGACCAATATGATTTAGATTTTGCTGAAGAAAATGATTCGCAGCCCAACGAAAGTGTGCAACAATTAAATGATCTGTCATCGGACGATGATTTAAATCTCGAAATAGAATATATGGAATATTTGGAGGACGAAGAAGAAGACACTTGCGTGAACAAAGATATTGACGAAACATTTGAGAATGCGAGACAGCATTTGaACAACCCAGATTTATcccatgaattaaaaattaattcctGGAAGGAGTATAAACATATATGCTTCATTTGCGACAGTATTTTCCCCTCCTTCATCGATTTAAAAATTCACATTGCTGAGGAGCACAGCATAACATCATTAGACAACATAAAGTACAAATGTTATGACTGCAGAAAAATCATAGCGcgttatagtttttttcttaatcaCGTACGTGCAGTGCATCATCcagatttgaaattaaaatgtgaTGCTTGCGATCTaagtttcaaaaactttaatgaGCTTAAAATTCATCGAAGTGCTGGTTGTGTGGAAGCTAAGAATTTTATGAATTCGACACAGTGCAATTATTGTTTCAAAAGTTTCAATAATACATATGGGCTACAGAATCACATAAAATTTCAGCATATTTCTTTGACCAAAATCGTCTATAAATGTGAACTCTGcgataaaacatttcaatataaaaactgTCTAAAATCACATAAACGGCTTCACTCAGATATTAAACTTTTTGCCTGTGACTATTGCGACAAATCGTTTCACAATAAATTGGGCTTAGAGCAACATCTGTATACTCATATCGAAGAGAAATCTTATCCCTGTAATATATGCAATAAAAGttacaaAACTTTTCAAAGTCTTGCTGAGCACAAAACATtgcatacaaaagaaaaacacttcaAGTGTCAATTTTGCATTAAAGTCTTTAAACGCAAAATACAAAAGATCACGCATGAGCGCAGCCATACAGGAGAAATGCCATATTCGTGTGAACAATGTgataaaaaatttcgttatcGTAGTGCTCTATTTGTCCATAGCAAAGTTCATAGCGGTCGTAAACCTTACTCGTGTGATTATTGTACAAAAACTTTTGCCGATAGTTCAAATCGCAATAAGCATGTCAGACGAATACATTTAAAGGACAAAAtgctggaaaataaaattgagtaa
Protein Sequence: MVGLCRLCASLRKIDVLTIVKDNSSEICDKLRKCCQLDITIDDGLPKSICQECISHLNNSHIFYTKVQEAQETLQALYPSQVNKTVRNSLQQYLQAYDEIDRFPTKPAETDAAKEYKNIENSSQHIKLANNLFKESKNNPNKLSTRKAEEVGQIEKSAPELKVSEDSCETIQNIEDLKEGGKELQGPHADSVDDLYQEDLAEEPNLKYSEDQYDLDFAEENDSQPNESVQQLNDLSSDDDLNLEIEYMEYLEDEEEDTCVNKDIDETFENARQHLNNPDLSHELKINSWKEYKHICFICDSIFPSFIDLKIHIAEEHSITSLDNIKYKCYDCRKIIARYSFFLNHVRAVHHPDLKLKCDACDLSFKNFNELKIHRSAGCVEAKNFMNSTQCNYCFKSFNNTYGLQNHIKFQHISLTKIVYKCELCDKTFQYKNCLKSHKRLHSDIKLFACDYCDKSFHNKLGLEQHLYTHIEEKSYPCNICNKSYKTFQSLAEHKTLHTKEKHFKCQFCIKVFKRKIQKITHERSHTGEMPYSCEQCDKKFRYRSALFVHSKVHSGRKPYSCDYCTKTFADSSNRNKHVRRIHLKDKMLENKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -