Sbel004344.1
Basic Information
- Insect
- Sturmia bella
- Gene Symbol
- -
- Assembly
- GCA_963662145.1
- Location
- OY759168.1:99419821-99423994[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.023 1.5 9.8 3.6 1 23 78 101 78 101 0.96 2 12 0.0011 0.072 14.0 4.4 1 21 108 128 108 129 0.95 3 12 0.0044 0.29 12.1 0.3 1 23 138 160 138 160 0.97 4 12 4.7e-06 0.00031 21.4 0.6 1 23 166 189 166 189 0.98 5 12 0.00049 0.032 15.1 0.7 1 23 194 218 194 218 0.98 6 12 5.5e-05 0.0036 18.1 1.8 1 23 224 247 224 247 0.97 7 12 0.0011 0.072 14.0 2.7 1 23 346 369 346 369 0.97 8 12 0.0019 0.12 13.3 0.5 3 23 386 407 384 407 0.93 9 12 0.002 0.13 13.2 2.9 1 23 412 435 412 435 0.96 10 12 0.32 21 6.2 1.2 1 23 448 471 448 471 0.95 11 12 0.0029 0.19 12.6 0.7 2 23 484 506 483 506 0.94 12 12 0.0012 0.079 13.8 2.1 1 23 518 541 518 541 0.95
Sequence Information
- Coding Sequence
- atgataagacaaaagaaaaagtgtgtTTTGTTTCTAAGGGAAAGTGCATCAAGAGTTTCTGTGTATAATTTCAAACTTCTTACGGCCTCTATTTTAGACCTTACATTCACTACGCTCAAAGAGGAAAATTCAAAACTTACCACCAGCTCCCATGCAGAAACCCTAATAAATACCACAATTATACCCATAATACCAACCGGTATTAGACTCCCCATACCGGCTGGACCACCATTTATATGTGAACTATGCGGTCATAGTTCGAATACTAAAAATCTATTGGCCTCCCATCGCCATCGCAAACATCGCCACAAGGAGTTGCCTTATCAGTGTGCAAAATGTGATAAATCTTTTAAATCCCATCAACAATTTGACAAGCATAAGAAACGTTTATCTTGTGAGCGTTATCCTGAATTTATATGCGATTATTGCAAGAAGAGAATTATTGGATCAGCGAATTATGAAATTCACTtgagatttcataaaaaaatttatcctTTTAAGTGCCCCGATTGTGGCAAAGCGTTTATGTTGGCCGTTCATCTTAAAGAGCATGTACAAACGAAACACGAAAACAAACGCTATCAGTGTAAAGTGAGCAATTGTGGCAAACTGTTTCAGTCTCTGCAAGCCTTAAAAactcatatgtatattcattgtGGCTCCCTGCCATTCGCTTGTGAATACTGTCAAAAGATGTTTCCGCTCAGAAGCAGATTGCGCCATCATATTCAAACTGTTCACAGCTTTGAGGTGAACACTGCAGACTTAGAACGGGTGCTGGGGGCAGAGGAAATAAACACAAAAGCTGAAAACAAACCTATAGAATTAATGAAATGTGAAAATCCAAACGAATATAATGATAACGATATACCGACCTCCCCGGCAACTGAGTTAAATGCTGTAGATATAAAGCTTGAGAATGAATGTGTGCTAGAATACACTATATCCAGTCCAACAGTAAGTACGCATATGCCGTCTGACCTCATCTCACCCAGTGAAGAACCACCAGAGGAAAGAGCGCTCTCACAGCCACCATTTAGTTGCCAGTATTGTGGCCACAGTTTGCCAACTAGAAATAGTTTATACAAACATGTACAAAGAAATCATGGAGTCGAAAAGCATTTAAACGAAAAACCCATTCAGTTGCCACAAAATTGTCCCTTCTGTTATAAACAGTTTAGTAGAATGGGTGCCTTGCGACTGCACATCTCTGAAAAACATTCAAACAAATGCTTTGCGTGTGAATATTGTGGTCATAGTGTGCCTACGAAAAATGCTCTGTGTCAACATCGTCTGAGAAAACATCCCGAAGTTAGAATACGAAAtatgaaaattgtgaaatttaaatgctttagtTGTGCAGAGTACTTTCAAACGCTGGAAGATCTACAGCTTCACAAGGAGAGTAAACATATTCCAAAGCCTCAAGTAGATGAAAAATTATGGATTGAATGTAAAGATTGTGGCTATAAATTGCCCACGAAAAATGCTTTATCTCAACATCGCTTTCGCAAGCATCGTAATATGCGTAAAAGTGCTACAAAAAACGCTTTCCACTGTACACACTGTGATGCTGCGCTACCCACTCAGAAAGCGCTACAAAAACACCTCAAAGAAAATCATGAAGCTTTGCCGGCTCCGCTAAAAATGATGGAAAGCatgtag
- Protein Sequence
- MIRQKKKCVLFLRESASRVSVYNFKLLTASILDLTFTTLKEENSKLTTSSHAETLINTTIIPIIPTGIRLPIPAGPPFICELCGHSSNTKNLLASHRHRKHRHKELPYQCAKCDKSFKSHQQFDKHKKRLSCERYPEFICDYCKKRIIGSANYEIHLRFHKKIYPFKCPDCGKAFMLAVHLKEHVQTKHENKRYQCKVSNCGKLFQSLQALKTHMYIHCGSLPFACEYCQKMFPLRSRLRHHIQTVHSFEVNTADLERVLGAEEINTKAENKPIELMKCENPNEYNDNDIPTSPATELNAVDIKLENECVLEYTISSPTVSTHMPSDLISPSEEPPEERALSQPPFSCQYCGHSLPTRNSLYKHVQRNHGVEKHLNEKPIQLPQNCPFCYKQFSRMGALRLHISEKHSNKCFACEYCGHSVPTKNALCQHRLRKHPEVRIRNMKIVKFKCFSCAEYFQTLEDLQLHKESKHIPKPQVDEKLWIECKDCGYKLPTKNALSQHRFRKHRNMRKSATKNAFHCTHCDAALPTQKALQKHLKENHEALPAPLKMMESM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376863;
- 90% Identity
- iTF_01376863;
- 80% Identity
- -