Basic Information

Insect: Sturmia bella
Gene Symbol: -
Assembly: GCA_963662145.1
Location: OY759170.1:59271686-59278090[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00027 0.018 15.9 6.3 1 23 206 228 206 228 0.97

2 10 1e-05 0.00066 20.4 0.3 1 23 238 260 238 260 0.97

3 10 8.6e-05 0.0056 17.5 1.1 1 23 267 289 267 289 0.99

4 10 1.2e-05 0.00079 20.1 0.9 2 23 295 316 294 316 0.97

5 10 0.00059 0.039 14.8 4.5 2 23 326 347 325 347 0.97

6 10 2.8e-05 0.0018 19.0 2.7 2 23 355 376 354 376 0.96

7 10 3.9e-05 0.0026 18.5 5.5 2 23 382 403 381 403 0.96

8 10 0.00026 0.017 16.0 1.1 1 20 409 428 409 431 0.96

9 10 0.0048 0.31 12.0 0.3 2 23 437 458 436 458 0.96

10 10 0.0015 0.098 13.6 0.7 1 23 463 486 463 486 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00027	0.018	15.9	6.3	1	23	206	228	206	228	0.97
2	10	1e-05	0.00066	20.4	0.3	1	23	238	260	238	260	0.97
3	10	8.6e-05	0.0056	17.5	1.1	1	23	267	289	267	289	0.99
4	10	1.2e-05	0.00079	20.1	0.9	2	23	295	316	294	316	0.97
5	10	0.00059	0.039	14.8	4.5	2	23	326	347	325	347	0.97
6	10	2.8e-05	0.0018	19.0	2.7	2	23	355	376	354	376	0.96
7	10	3.9e-05	0.0026	18.5	5.5	2	23	382	403	381	403	0.96
8	10	0.00026	0.017	16.0	1.1	1	20	409	428	409	431	0.96
9	10	0.0048	0.31	12.0	0.3	2	23	437	458	436	458	0.96
10	10	0.0015	0.098	13.6	0.7	1	23	463	486	463	486	0.96

Sequence Information

Coding Sequence: atggAAAGTGTTTTGCCAATTTGCCGTATCTGTTTAAATTCTTCCAAGGAGTTCGTAGACTTTCAAGCACTTTTTGAATGTGACGATTGCTGTTTAAAGGATATAAGTGAAATGAATTATTTGCAATGCCTGCGCTTATGTACAAATATATCAATTGACGAAAACGACGGTGGACCACAGTGCTTATGTACGGGATGTGCACTAGAACTGCAATTggtgtataaatttttgcaaaaagtacaaTCATCACaacatattttagaagaaaaccTGTGGAAAACTGATTCGAATAACGAACAAATTGAACATACtgaaatttgtatagaaaagtgTGAGGATGCTAAGATTGAGGAGCTTTCCAGTGCTGCTGATGCCGAAGTGGCCAATAATAATGCggaatatttaaatagttacaCCGAAAATTCTACCGAGCTTTTAAATTACTGCGATGAATTACCAGCCAAATCAgatgaaaaactgaaaaattcttcaaataacTTTGAAGAAGTACACACACATGAATATGGAGAAGATGAAACTCTGCATGATATTGAATACTTACTGGAGGATTATAAAACTTTACAAAAGGATACACCCATTTTCATACCAAAGAAATATAAATGCTACATTTGTAATCGCTCCTACACTACAGAACATCATTTAAAAGTTCATTTATACTATCACAAACGAAGAAGCTCAAAAAGTCCAGCATATGTCTGTAAAATATGTGGAGCATCATTTTCGATGCAACGTTTCTTAACTCAGCATATGATCGAACATCAAGACTGTCGAGAGACTTACAAATGCCAATTCTGCGAAAAgGAATATGTTAGCAAAACTGCTTTGATTAGTCACAAGCGTATACACCAAGCAGAGGTACTAAAATGTAATGAATgtggaaaacaatttaatggCCGTTATGAGTTCAATGTACATCTACGTTATCATAGGCGTGAAAAAGAGTTGGACGGAATCAAATGTCACATATGCCACAAAGAGTTTTCATCCTCACGTTATTTACCACATCATATGGCCGTGCACCTGGACAACAATGAAAGGCTCAGCTGCAACTATTGTAATAagAAATATAGATCGAAAACTGCGCTGAACAATCATAAACGCTTACATGAAGGACAGACTTTACAATGCAATGTATGCGAGAAACACTTTACACGCAATTGTGAACTTAAAATTCATATGAGATTTCACAAACATGAACGTCCTTTTAAATGTACATTATGCGAAAAGGCGTTTGCAATTAAAGGCCACCTAAGATCACACATGTGGCAGCATCAACGTCTTAAAGTCGAATGTGACAAGTGTGGTAAACTATTTGGATCTACAAAAGCCCTCAATGAACATTCCTATACACATACTCAGATGCCATTTCCATGCGAGTTTTGCAACAAAGGATACCCTTCAAAGCAAAAatacAAAATTCATCTGGAAAAGGTTCATTGCAGTGAGGAAGATAAAATTGATTtgccaaaaattgaaaattcaacAAACGATAATACTGCAAAGCTgcgtaaaaaatatacatttgttCAGATGTTAAATGAAGATgtgattaatttataa
Protein Sequence: MESVLPICRICLNSSKEFVDFQALFECDDCCLKDISEMNYLQCLRLCTNISIDENDGGPQCLCTGCALELQLVYKFLQKVQSSQHILEENLWKTDSNNEQIEHTEICIEKCEDAKIEELSSAADAEVANNNAEYLNSYTENSTELLNYCDELPAKSDEKLKNSSNNFEEVHTHEYGEDETLHDIEYLLEDYKTLQKDTPIFIPKKYKCYICNRSYTTEHHLKVHLYYHKRRSSKSPAYVCKICGASFSMQRFLTQHMIEHQDCRETYKCQFCEKEYVSKTALISHKRIHQAEVLKCNECGKQFNGRYEFNVHLRYHRREKELDGIKCHICHKEFSSSRYLPHHMAVHLDNNERLSCNYCNKKYRSKTALNNHKRLHEGQTLQCNVCEKHFTRNCELKIHMRFHKHERPFKCTLCEKAFAIKGHLRSHMWQHQRLKVECDKCGKLFGSTKALNEHSYTHTQMPFPCEFCNKGYPSKQKYKIHLEKVHCSEEDKIDLPKIENSTNDNTAKLRKKYTFVQMLNEDVINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -