Basic Information

Insect: Sturmia bella
Gene Symbol: -
Assembly: GCA_963662145.1
Location: OY759169.1:59874614-59880087[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.5e-05 0.003 18.3 3.0 1 23 93 115 93 115 0.96

2 11 8.4e-06 0.00055 20.6 2.1 1 23 121 144 121 144 0.97

3 11 2.4e-05 0.0016 19.2 0.8 1 23 150 172 150 172 0.97

4 11 0.00023 0.015 16.1 2.5 1 23 178 200 178 201 0.95

5 11 4.3e-07 2.8e-05 24.7 0.5 1 23 208 230 208 230 0.98

6 11 0.0034 0.22 12.4 1.9 3 23 238 259 236 259 0.94

7 11 0.33 21 6.2 0.1 3 23 267 286 265 286 0.94

8 11 2.4e-07 1.6e-05 25.5 0.8 1 23 292 314 292 314 0.99

9 11 0.0075 0.49 11.3 5.2 1 23 320 342 320 342 0.99

10 11 0.017 1.1 10.3 0.8 1 23 348 374 348 374 0.84

11 11 0.053 3.5 8.7 0.2 1 22 380 401 380 401 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.5e-05	0.003	18.3	3.0	1	23	93	115	93	115	0.96
2	11	8.4e-06	0.00055	20.6	2.1	1	23	121	144	121	144	0.97
3	11	2.4e-05	0.0016	19.2	0.8	1	23	150	172	150	172	0.97
4	11	0.00023	0.015	16.1	2.5	1	23	178	200	178	201	0.95
5	11	4.3e-07	2.8e-05	24.7	0.5	1	23	208	230	208	230	0.98
6	11	0.0034	0.22	12.4	1.9	3	23	238	259	236	259	0.94
7	11	0.33	21	6.2	0.1	3	23	267	286	265	286	0.94
8	11	2.4e-07	1.6e-05	25.5	0.8	1	23	292	314	292	314	0.99
9	11	0.0075	0.49	11.3	5.2	1	23	320	342	320	342	0.99
10	11	0.017	1.1	10.3	0.8	1	23	348	374	348	374	0.84
11	11	0.053	3.5	8.7	0.2	1	22	380	401	380	401	0.95

Sequence Information

Coding Sequence: atggtaCGTAGTCGCCGCTCAATATCGAAAGATGCTTCCTCAGTTTTGGCTGATAGTGGCATATCGCTGTCCTCACCGCCATCCAATCGCAAACATTTTCCGCGTCTCAGTGAGCTTGAGGAGGAATCGTTATTGATAAAACTCTGTGTGACCGATGATGAAACTGAACCCGAATTCATAGAATTGAATACCGTAGAAAATGTTGTTATTAGCGATGACGACGAAGACTCGGGGAGTAGCAACAAAGTGTTCCGTGCTAAAAGAGCTCGTAAAACCTACATATGTGATACGTGTCATAAAGAGTTTCGCGGCAAATCCGATTTGACCAGGCACAAATTTGTTCACACAAATGAAAAGCCCTTTAAATGTGAAACCTGCAACAAATGCTACAGACAAGAAATTAATTTGCGAAATCACATAATATCCGCTCATAAGAAAGAGAAGGGATTTGCTTGTAAACAATGCCCCAAATCGTTTGCTCTTAAAGAAAGACTACGGCTGCATATGCGATTGCATACCGGAGAGAAACCTTATGCCTGCCAACAGTGCGACAAACGCTTTGCCAGAGGTGGCCAGttgcATCAGCATTTGGTGACCCATCATCAAGATGCACCCAAacaatttaaatgtgaaatttgcTCAGAGCGCTTTTCCACGGCATCCAATTTAAGGATTCATGTGCAGAGCCATAAAGAAACGCCCGATTGGTTTtgtgaaatatgtaaaaaacattttgccaacGATGTCCTTTTAAAAGCTCATGTACATAAATTGCACTATAAACTCAAGCAAATCGATTGTGATATTTGCAAAAAGCCCATCGAGGAAAATGATTTATCCAGTCATATGAAATCTCACAGCAACGTCAAAACTTATGTCTGCGAAATCTGCAATTCGGTATTTACTCAAAAATCTCAATTCAATGTACATATGCGTATGCATTCTGGGGAGAGGCCTTTTCAGTGTAGAATTTGCTGTCAAACATTTGCCCATTCAAGCGTTCTAAAACTTCATATACGAAAACACACTGGCGAAAAGCCCTTCAACTGTTTGCTGTGCAAAGGTGATGAAGTGGCCTTTTCTCAGTTGGCTCACTTGAAAACccacatgaaaaaaattcacaaacaaCTAAAACCTTATATGTGCGAGGGCTGCCAAAGTTTTTACAAAGTCAAAATTGATCTGGAACTTCAtcagaaaaaatgcaaaaagtttacCTCGACGGCAGAAGAACAAGATGCTCAACTTAAAGAGCTACAAACGTTATCGCACATACGTTTTCTCATGGCTATTCTGCTAAAGAAGATATCTTCCGAGCAAAAGTTGCAACAGCTGGGCTTCGAAAAACGTCTAATAGACAACGTTGTTATAGCCGCCTTAAAAGTAGCCAACCGTAATGCTCACGATGATCTTAAGTTATCCGTTTTAGAAAGAATGCGTTTAAATGTTGAGGAATTTCTTAACTGGATAGTACCCTCAATATTAATGGAGAAATTTCGCGAACAAAACCAAAGCATCGATAGTATTTTGGAGAAAATTGTTTCCATGTACatgaaacaaaagtaa
Protein Sequence: MVRSRRSISKDASSVLADSGISLSSPPSNRKHFPRLSELEEESLLIKLCVTDDETEPEFIELNTVENVVISDDDEDSGSSNKVFRAKRARKTYICDTCHKEFRGKSDLTRHKFVHTNEKPFKCETCNKCYRQEINLRNHIISAHKKEKGFACKQCPKSFALKERLRLHMRLHTGEKPYACQQCDKRFARGGQLHQHLVTHHQDAPKQFKCEICSERFSTASNLRIHVQSHKETPDWFCEICKKHFANDVLLKAHVHKLHYKLKQIDCDICKKPIEENDLSSHMKSHSNVKTYVCEICNSVFTQKSQFNVHMRMHSGERPFQCRICCQTFAHSSVLKLHIRKHTGEKPFNCLLCKGDEVAFSQLAHLKTHMKKIHKQLKPYMCEGCQSFYKVKIDLELHQKKCKKFTSTAEEQDAQLKELQTLSHIRFLMAILLKKISSEQKLQQLGFEKRLIDNVVIAALKVANRNAHDDLKLSVLERMRLNVEEFLNWIVPSILMEKFREQNQSIDSILEKIVSMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01314024;
90% Identity: iTF_00655495;
80% Identity: -