Sbel017673.1
Basic Information
- Insect
- Sturmia bella
- Gene Symbol
- grau
- Assembly
- GCA_963662145.1
- Location
- OY759172.1:7695119-7701071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.5 3.6e+02 2.3 0.1 6 23 277 294 277 294 0.97 2 15 0.0028 0.18 12.7 2.5 1 23 300 323 300 323 0.97 3 15 0.00025 0.016 16.0 0.1 2 23 329 350 328 350 0.95 4 15 0.00087 0.057 14.3 0.4 2 23 359 381 358 381 0.96 5 15 0.0058 0.38 11.7 0.3 3 23 389 409 388 409 0.96 6 15 0.0081 0.53 11.2 2.8 2 23 418 439 417 440 0.94 7 15 7.9e-05 0.0052 17.6 0.1 1 23 449 472 449 472 0.97 8 15 3.1e-06 0.0002 22.0 0.8 2 23 479 500 479 500 0.98 9 15 0.0033 0.22 12.5 3.2 1 23 506 529 506 529 0.95 10 15 2.2e-06 0.00014 22.5 0.2 2 23 787 809 786 809 0.96 11 15 0.3 20 6.3 1.0 3 23 817 837 816 837 0.96 12 15 0.025 1.6 9.7 0.5 2 23 846 868 845 868 0.95 13 15 0.079 5.2 8.1 0.9 1 23 876 899 876 899 0.90 14 15 2.1e-05 0.0014 19.4 3.5 1 23 905 927 905 927 0.98 15 15 1.6e-05 0.001 19.8 3.1 1 23 933 956 933 956 0.98
Sequence Information
- Coding Sequence
- atgagtTGTTTATTgtgcttgaaaataaatgaaatagagAAAAGCATTATTACTTTTAGTTCTGACGAGTGGCAAAAACTTAATATTCAATATATCATTGAAAAATACCTTTGGAAAATGGAAAATTTAAACGATCAGTCAAATGTATGCCAACCATGTTGGCAGGAATTATATAATTTCCAtaagttttacttaaaaatcgAAAAGGCTCATTcaaatttaactattttaataaaaccagaaTTAATTTCGGAGGATACCCCAACTGTGAAATCGAATCGAATTCAATTCGGTGAGACCAAAGAAAATGCTCAACTTGAAcctgaaattttattgctaaagGAAGAAAATCCTTTGGAGATTTTCGAAAAAGAGGATCTGGAGGAAGTAAGCTGCTTGAAAAAACGAGCCAAACGTAAATGCTCTTTAAAAAAAGATatacaaaatagcaaaaacaagCATAATCAAAGCGATTCAAAAAAGAGACTTAAAAAGGAAACTAAATCTGCCAGgctcaaaaacttaaaaactgttataaacaaagaggaaaaaaatgcaACAGTACAAGGAGAAGAAGAAATTGACTGCACAAATGCTATGCCCGACGATAATTTTGGCGATCATCATGATGTCAATTTTGAAAGTGATGATGAACCTACAAATGCCCTGGATTCGCCGAAATTACATCAACTACGCCAGGAGCATGATAAATTTATAGCCGAGCACATGCAAATCATGTGTGCCCTTTGCCAAATTCCCCTAGCATCATTCTCTACGACGATAAAACATTACAAAGATGAGCACAATCAGCGTGGATACGCCATTTGCTGTAATCGCAAACTCTATGATCGTTCAGAAATAATGGATCACATTAAATTACATCAAAACCCTGAATTTTTCAAATGCAGCTATTGTGAAAAAATTCTATCGAGCCGAATCTGCCTgaaattacatataaaaaatgtgcaTGAGCACAAAAACGTTGAGTGCGATATTTGCGGCAAAAGTTTAGCAACTGAATCGAGTTTAAAAATGCACAAACTATTGCACGATGCTGATAATAATGTTAAAATACCCTGCAAACAGTGTGATAAGTCctaCCTCTCGAAGTTTTCCTTAGCCAATCACATACGCTCTgttcacttaaaaaaatatcataaaatttgTGACTTGTGTGGAGAGTCAATATCCGGAAAATCCAGATTTAAGCGTCACATGTTGGAACATGAAGGTAAAGCACCACCGATGGTCAGTTGTTCAGTTTGTGGACGTCGTTTAGCCGATATGAAATGTTTGAAGCGACACATGGGCTCTCATCATCCTCCGGAAGGAGTCAAGCCCGAATTTAACTGTCCAATGTGCACAAAACTATTTGCCAGTCCTTCTAAtgtaaaaatgcatataaaggTAGTGCATGAAAATAGTTACGAACGAAAATGTACATTGTGCGAGAAAACGTTTAAAAGACCCGATGCTCTGAAGGATCATATGGCAAAACATATTGGTAAACCATTACACGCATGTGGTTTTTGTCCAAAGACGTTTTATTCAAACGGTCAAATGCATGCGCATCGCAAGAGAGTGCACCCTCTCGAATGGCAGGAATCAATGAAAGGTTGCTTGCTATGTCTGGAAATAAGACAAGATTTAGTTGGAAGCGTTAAAGTTGATTCGACAGaatggcaaaaattaaatattcaaagcTTGATCGAAAAGCATTTCTGGCCCATGGATGCATTTGAATCAGATGGATGGCTGTGCATCACTTGCTGGCAAGAACTGTATGGTTTTCACAAGTTTTATGTGCGTGTAGAAGAAGCTCATGCCGAGTTAGGCTCTGCgacaagtaaagttgaaaatataAACCTCACAAATGACGGGATACAAAATGAGGAATTTAAACAGACAATCGAAAAATTAACATTCGAGGAAACTCATTATGAACGGCAAATTTCTATTAAAGATTCTCAGCaaagtgaaaattttgttgaactGGATATTGCTATTAAGGAGGAAGAAAATGAGCATGTAATTAAAGATAATGTTTCCATCACCAGACATAGAAATGGTCGTAAAACTACATTAGTTAATAATGAAACTTTGATTGAAGATCCTTTGAGTAAAAAGAAACAATGTCGAAAAATATCGGCAAGAAAAACAAGAACTTCAAAATTTAACGATACTGAAACTGAGGAATCggaaataaatttatcaaaaactatctttgaAAAAACTGAGATAAAAGAAGATCCTGATTTGATGGAAATGCATGAAGATGAACAAAATAACGATGAAAGTGATTCAGAGTCCAATTATGAGCCTATGAAAGATGTTGTggaaaaaaatgagaaacacaTTCCGTGTACAGAGTGTGGCAAGAAatttgCAAGTAAGTCCCTTCTGTCAAATCATGTTCGATCGGTGcacctaaaaaaatatatgaatatatgcGATATATGTGGTAGATCGATTAGATGCAAGGAGGTTTTTGAACGTCACATGTTGCAACATGAAGGCAAACCTTTACCCACTGTTACTTGTGATGTTTGTGGTTTATTGCTCGCCAACAAGCACAgtttaaaacaacacaaattgATGGTTCATCCGGAGGGTGGAAAAAAGGAATTTACATGCCCAGTATGTGGTAAAATTTCACCAAATTTGAAGGCTcataaaaaacatgtgcaatacAATCATGAATGGGGCTATGATCACAAATGCACAATGTgtgaaaaagcttttaaaacagCACATACATTAACAgAACATATGGCATCCCATACCGGTACTGTTCTGTATACTTGCCCTTGGTGTCCAAAAACTTTCAATTCAAATGCTAATTTCCACAGCCATCGTAAGAAAAGTCATCGAAAAGAGTGGGAAGAAGCAACAAGAAAGAAATATTCCGGAAACCTACCACCTAATTACAATCCACCTCTATTAAAtacaaactaa
- Protein Sequence
- MSCLLCLKINEIEKSIITFSSDEWQKLNIQYIIEKYLWKMENLNDQSNVCQPCWQELYNFHKFYLKIEKAHSNLTILIKPELISEDTPTVKSNRIQFGETKENAQLEPEILLLKEENPLEIFEKEDLEEVSCLKKRAKRKCSLKKDIQNSKNKHNQSDSKKRLKKETKSARLKNLKTVINKEEKNATVQGEEEIDCTNAMPDDNFGDHHDVNFESDDEPTNALDSPKLHQLRQEHDKFIAEHMQIMCALCQIPLASFSTTIKHYKDEHNQRGYAICCNRKLYDRSEIMDHIKLHQNPEFFKCSYCEKILSSRICLKLHIKNVHEHKNVECDICGKSLATESSLKMHKLLHDADNNVKIPCKQCDKSYLSKFSLANHIRSVHLKKYHKICDLCGESISGKSRFKRHMLEHEGKAPPMVSCSVCGRRLADMKCLKRHMGSHHPPEGVKPEFNCPMCTKLFASPSNVKMHIKVVHENSYERKCTLCEKTFKRPDALKDHMAKHIGKPLHACGFCPKTFYSNGQMHAHRKRVHPLEWQESMKGCLLCLEIRQDLVGSVKVDSTEWQKLNIQSLIEKHFWPMDAFESDGWLCITCWQELYGFHKFYVRVEEAHAELGSATSKVENINLTNDGIQNEEFKQTIEKLTFEETHYERQISIKDSQQSENFVELDIAIKEEENEHVIKDNVSITRHRNGRKTTLVNNETLIEDPLSKKKQCRKISARKTRTSKFNDTETEESEINLSKTIFEKTEIKEDPDLMEMHEDEQNNDESDSESNYEPMKDVVEKNEKHIPCTECGKKFASKSLLSNHVRSVHLKKYMNICDICGRSIRCKEVFERHMLQHEGKPLPTVTCDVCGLLLANKHSLKQHKLMVHPEGGKKEFTCPVCGKISPNLKAHKKHVQYNHEWGYDHKCTMCEKAFKTAHTLTEHMASHTGTVLYTCPWCPKTFNSNANFHSHRKKSHRKEWEEATRKKYSGNLPPNYNPPLLNTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -