Sbel017681.2
Basic Information
- Insect
- Sturmia bella
- Gene Symbol
- -
- Assembly
- GCA_963662145.1
- Location
- OY759172.1:7743697-7748453[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.6e-05 0.0017 19.1 0.6 3 23 12 33 10 33 0.95 2 17 0.22 15 6.7 1.0 2 23 42 64 41 64 0.95 3 17 0.0021 0.14 13.1 3.2 1 23 71 94 71 94 0.96 4 17 0.0013 0.082 13.8 0.5 1 23 100 122 100 122 0.96 5 17 4.2e-05 0.0027 18.4 1.6 1 23 128 151 128 151 0.96 6 17 9.7 6.4e+02 1.6 1.8 9 23 221 235 220 235 0.95 7 17 0.00011 0.0071 17.1 0.4 3 23 243 264 241 264 0.95 8 17 0.00045 0.029 15.2 0.4 2 23 273 295 272 295 0.96 9 17 0.0048 0.31 12.0 5.1 1 23 302 325 302 325 0.96 10 17 1.2e-05 0.00079 20.1 2.5 1 23 331 353 331 353 0.98 11 17 0.00034 0.022 15.6 2.4 1 23 359 382 359 382 0.95 12 17 0.94 62 4.7 3.7 9 23 444 458 443 458 0.97 13 17 1.2e-05 0.00077 20.2 1.0 3 23 466 487 464 487 0.96 14 17 0.026 1.7 9.7 0.2 2 23 496 518 495 518 0.96 15 17 8e-05 0.0053 17.6 1.5 1 23 525 548 525 548 0.95 16 17 1.6e-07 1e-05 26.1 2.2 1 23 554 576 554 576 0.98 17 17 1e-05 0.00065 20.4 1.2 1 23 582 605 582 605 0.96
Sequence Information
- Coding Sequence
- ATGATTACGCATGATCCCcaacaaattcaaatatgtgTTAAATGcggaaaatcatttaaaaataaggcCAACGCTCAAAAACATGAAAGAAACGCTCATACTAATTACAAACCCGAACCTCAGCAATGTGCTATTTGTAAAAATTGGTATACGACAATAGGTGGTTTGAGGCATCACATGAGAAATACACACGATACCACGGGCCGAGTGCATCGTTGTTATATTTGTGATCATGTAGCGACTACATCTGCGGCCCTTAAGAGGCATATCCATCGAATTCATGAGAGTAAAGATAAATACAAGTGTACTATGTGTGAAAAGACTTTTAATATGggcttatatttaaaaGAACATATGGCAGCGCACACAGGTGAGGCTCTTTACGCCTGCCCCCATTGTCCTGTGACCTTTTCTCATAATGCAAATTggtacaaacatttaaaaaatgtacacaaGGCAGAATATGCGGCATATAAACAACAAGATACAACACCACCTATTTTGAAAATAGCCAAAATGGCATCTGAGAAAATTCGAGCAAAAAAACGTGTAACAGATCCATCAGTGGGCAGTACAAATGAAGGGCTTGTCACTTCTTGCGCTGTGGTTGTGTCAGCTGATACAAACACTGCTTTGGAAATTGAAACAAATTCGGTTTTATCcTTTTCGACTAAAACAAAGTTCCGTTTTCACATGCGCATTCATGATCCTAAGCGTATTGTGATATGTGATAAATGTGGAAAATCATATAAAAGTAAGGCCAGCGCTCAAAAACATGAAAGAAATGTGCATTCGAATTATAAGGCAGAACTGCAACAATGCACCATTTGTAATACTTGGTATACCGGTGCGTCAAATTTGAGAAGACACATGAACAATATACACGATAGCAGGGGCCAAGAACATCGTTGTAGCATTTGTAATCATGTTTCGACTACATCGACGGCTCTCAAGACGCATATCCATAGAGTTCATAAGTGCAAAGATAAACACAAGTGTAATATGTGTGAAAAGACTTTTAATAGGGCTCTATATTTAAAAGAACATATGGCAACACATACGGGAGAAGTTCTTTACGCCTGTCCCCACTGCCCCGTGACTTTTACTCACAATGCAAATTGGTACAAGCATTTCAAAAATGTACACAAGTCAGAGTACGCAGTATATAAACAACAAGATACAACGCCGCCTATATTAAAAATAGCGAAAATGGCTTCTGAGAAAATTCGCACAAAAGAACGTACAGCAGATTTATCAGAAGGCCGTACAAATAAGGAACTAGTTATATCTTCCCATATTGTTATATCAGCTGAGCATAACACTACTTCGTCcTTTTCGACCAAGAAAAAGTTTCGTCATCATTTACGAATTCATGATCCTACTTTAGCTCAGATATGTTCTAAATGtggcaaaacatttaaaaataaggaaaacgcGCTGAGACATGAAAAAACCGCACATTCCGGTTTCAAACCTGAACCTCAACAATGTAAAATTTGTGGCACTTGGTATACCACAGTAGCAGGTTTGCGGTTGCACACGAGAAATATACATGATAGCGCGGGCAAAGAACATCGTTGCCATATTTGTAATAAAGTTGCGTCCACACCACGCGCTCTCAAGAATCATATCCTTCTGAATCACAGATTCAAAGAGAGATACAAATGTCATCTGTGTGACAAGGCTTTTAATAGGAGTTCACAGTTGAAAgaACACATATCTGTACACACTGGTGAAACTCTCTATGCTTGTCCCATTTGTCCCACAAACTTTTCTCACAGTTCAAATATGTACAAGCACTTAAAGAACGTGCATGCGACAGAATATGCGGCATATAAGCAAGACGGTGCAAATATAAACATtctgaaaattgccaaaacggCTTCGGCAGAAAAACGCGTCAAAAAACGTTCAAAGGATTCGTCGGCTACACGCTCTCGCAGCAATAATCTTCTGGCATCTCATGTTGTTGTTTCACCTGACGAAATTTATACCATTAAAATTGAAAGGAGGACGGAATAA
- Protein Sequence
- MITHDPQQIQICVKCGKSFKNKANAQKHERNAHTNYKPEPQQCAICKNWYTTIGGLRHHMRNTHDTTGRVHRCYICDHVATTSAALKRHIHRIHESKDKYKCTMCEKTFNMGLYLKEHMAAHTGEALYACPHCPVTFSHNANWYKHLKNVHKAEYAAYKQQDTTPPILKIAKMASEKIRAKKRVTDPSVGSTNEGLVTSCAVVVSADTNTALEIETNSVLSFSTKTKFRFHMRIHDPKRIVICDKCGKSYKSKASAQKHERNVHSNYKAELQQCTICNTWYTGASNLRRHMNNIHDSRGQEHRCSICNHVSTTSTALKTHIHRVHKCKDKHKCNMCEKTFNRALYLKEHMATHTGEVLYACPHCPVTFTHNANWYKHFKNVHKSEYAVYKQQDTTPPILKIAKMASEKIRTKERTADLSEGRTNKELVISSHIVISAEHNTTSSFSTKKKFRHHLRIHDPTLAQICSKCGKTFKNKENALRHEKTAHSGFKPEPQQCKICGTWYTTVAGLRLHTRNIHDSAGKEHRCHICNKVASTPRALKNHILLNHRFKERYKCHLCDKAFNRSSQLKEHISVHTGETLYACPICPTNFSHSSNMYKHLKNVHATEYAAYKQDGANINILKIAKTASAEKRVKKRSKDSSATRSRSNNLLASHVVVSPDEIYTIKIERRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -