Basic Information

Insect: Sturmia bella
Gene Symbol: -
Assembly: GCA_963662145.1
Location: OY759170.1:3313865-3316456[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.4e-06 0.00022 21.9 3.8 2 23 169 190 168 190 0.97

2 15 0.00014 0.0095 16.7 3.7 1 21 196 216 196 217 0.93

3 15 0.8 53 5.0 5.5 1 21 276 296 276 297 0.95

4 15 0.0002 0.013 16.3 0.6 3 23 308 329 306 329 0.96

5 15 1.1e-05 0.00071 20.3 0.5 1 23 414 436 414 436 0.97

6 15 0.0051 0.34 11.9 3.2 1 23 442 464 442 465 0.95

7 15 0.0049 0.32 11.9 0.3 1 23 486 509 486 509 0.96

8 15 2.5e-05 0.0016 19.2 1.8 1 23 515 537 515 537 0.98

9 15 2.1e-06 0.00014 22.5 2.4 1 23 543 565 543 565 0.99

10 15 1.3e-07 8.2e-06 26.4 1.8 1 23 571 593 571 593 0.96

11 15 0.0081 0.53 11.2 4.1 1 23 599 621 599 621 0.97

12 15 0.00096 0.063 14.2 2.2 1 23 627 649 627 649 0.96

13 15 6.4e-07 4.2e-05 24.1 0.4 1 23 655 677 655 677 0.99

14 15 1.5e-06 0.0001 23.0 1.7 1 23 683 705 683 705 0.99

15 15 0.0096 0.63 11.0 0.1 1 19 711 729 711 730 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.4e-06	0.00022	21.9	3.8	2	23	169	190	168	190	0.97
2	15	0.00014	0.0095	16.7	3.7	1	21	196	216	196	217	0.93
3	15	0.8	53	5.0	5.5	1	21	276	296	276	297	0.95
4	15	0.0002	0.013	16.3	0.6	3	23	308	329	306	329	0.96
5	15	1.1e-05	0.00071	20.3	0.5	1	23	414	436	414	436	0.97
6	15	0.0051	0.34	11.9	3.2	1	23	442	464	442	465	0.95
7	15	0.0049	0.32	11.9	0.3	1	23	486	509	486	509	0.96
8	15	2.5e-05	0.0016	19.2	1.8	1	23	515	537	515	537	0.98
9	15	2.1e-06	0.00014	22.5	2.4	1	23	543	565	543	565	0.99
10	15	1.3e-07	8.2e-06	26.4	1.8	1	23	571	593	571	593	0.96
11	15	0.0081	0.53	11.2	4.1	1	23	599	621	599	621	0.97
12	15	0.00096	0.063	14.2	2.2	1	23	627	649	627	649	0.96
13	15	6.4e-07	4.2e-05	24.1	0.4	1	23	655	677	655	677	0.99
14	15	1.5e-06	0.0001	23.0	1.7	1	23	683	705	683	705	0.99
15	15	0.0096	0.63	11.0	0.1	1	19	711	729	711	730	0.97

Sequence Information

Coding Sequence: atgttaatACTTGAAATATATGGAAGGGTGtgtcgtgtgtgtatgtgtgaatcAAGTAATTTGCATGATTTAAATGAGACCACTGAAGAGTGTCTAACCATGAATGAGATGTTGTCGAAGACTGTGTCTGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAGATTTGCGATTTATGTATGGAGCATTTGCAGATTTCCTTTAGATTTCAACAGCTTTGCATGACAACAAATGAGCAAATGCTTAAAATCTGGGAGCAATCTCAAAAGGAAGAAGTTAAACAGCAATCAATAACAGATGAAGGTCCGAATGTAGAAGAACCAGATCCTATTAAAGTTGAATGTGAGCTCGAAGGGCATGATGATGGAACTAGTAACGTGGAAGAGTTAGAGGAATTTATAAGTTTGGAAAATGGTAATAAATGGCGAAacgaaaatggaaaattaactaataatgatGATTTGTCACTACCATCTGGTCGACAATCCGGTAGTCGTTTACCCTGCCCAGAATGTAAGGAGACGTTTACAAAAAACACACACCTAAAACGTCATCGCAGAAAACACGAATTAAGTCATCCTTTTAGCTGTCGCAAGTGTACAAaacgttttaaaacaaaaagtttattgcaGAAGCATTCTAAAAGCtgtaaaaaagataaaaaggaAGACCCGGTCAAAAGCGAAATTGAGGATAATGAAGATGATGATGTTCCTCTTAGCACGTTAATAAAAGTGGAAACAGATAACGAAAGTGATATATCTAAGGAAAATgataaaaggaaaagaaaagcaGTTAAAACTGTGGATAGAAAAACTCCTTATCATTGCACTAAGTGTGATAGCTATTTCAAATACGGCTATCAGCTTTCAAAACACCTCTGCAGTGACAATGATAATGGTCAAAGCGCAATAGCATGCGGAACTTGCAACGAAACATTCGATTCGGAAAATAAGCTGCAAAAGCATATGAATAGTAAGCATAAAATAACGAAAATTAAAACGAAGAGGGTAAAACTAGCAGCGAAGTCTCCGGATAAAAATAAAGGCAGCAATTTTGAAGATGATAACAAGAATAATGAAATAGACTTAGATCAAGACAATGACAACGACAACGATGAAAATTGGAATGACACAAACCAGGTTGATTCATCGGACGACAGCGAATCCGATTACTTAGAAAAAGACAACAAGGGGGCAGCATCAAAATCTAAAGCAGAGCcggatgaaaataaatttgcttgtaATGAATGTGATGCAGCATTTAGGTTTGAAAAACAACTAGCCCGACACATGAAAAAACATACGGAAGCACATCGCTTTGTATGCGCTTTGTGTTGGGATCGATTCAAGTATCCCCACATGCTGCAGAAACACATGGAAAAACATCATCCTGAAGATAATCCCAACCCTAAAACTGTTGAGACCAAGcaagaaaacattgaaaagaCACATGTTTGCAGTTATTGTCCTTCGGCTTATTCCAATGTTGGTGGCTTGGCTCAGCATATGAGTAAGAAGCACCCGGAAATTAAACCTTTTAAGTGTGACAAGTGTGATAAGATTTTTGTAGttgaagaacatttaaaaatacacacaaatcGTCATATGGGTatcaaaaacttcaaatgcgACCTTTGTGATAAATcattttcttttaagtttgcTATGAAACAGCATATGCGCATACACACAGGtgacttaaattatttatgcaccttatgcggaaaaaaattttataggccTAGTAATTTGCGTCAGCACATGCAACGTCATGGTGATGACAAACCATACACATGTCCTCACTGTCCGAAACGTTTCAAATGTCCTTCGGATCGTTATATACACTTGATGTCACATCAAGAAGGCAAAAATCATGTGTGCCAAACTTGTGGCGCACGGTTTTCGCGGGTAGACACTTTACATCAACATCAAATACTACATACGGGAGAGAAACGTTATAAATGCGATCAATGTCCAATGGCATTCCCTCGCTTGATGAATTTAAATCGTCATTTACGCACTCATACTGGCGAAAAACcatataaatgtaaattttgtgaaaaagcgTATGCACAAAGTAATGATTTGAATAAACATTTACGCACGCATGTAGGTGAAAACACATATATGTGTACCCAGTGTCCGGCTGCCTACAAATACCAAGCTGAGCTTAGAAACCATGAATGGGAACATTATCGTCTGCAAAAGGAAGCAGAACAGAAAGCTAAAGAAGAAGCATcggcactaaaaataaaagaagatcAAACTCCAATGGAAGTAAATGTATAG
Protein Sequence: MLILEIYGRVCRVCMCESSNLHDLNETTEECLTMNEMLSKTVSGIHANIEFPVPQEICDLCMEHLQISFRFQQLCMTTNEQMLKIWEQSQKEEVKQQSITDEGPNVEEPDPIKVECELEGHDDGTSNVEELEEFISLENGNKWRNENGKLTNNDDLSLPSGRQSGSRLPCPECKETFTKNTHLKRHRRKHELSHPFSCRKCTKRFKTKSLLQKHSKSCKKDKKEDPVKSEIEDNEDDDVPLSTLIKVETDNESDISKENDKRKRKAVKTVDRKTPYHCTKCDSYFKYGYQLSKHLCSDNDNGQSAIACGTCNETFDSENKLQKHMNSKHKITKIKTKRVKLAAKSPDKNKGSNFEDDNKNNEIDLDQDNDNDNDENWNDTNQVDSSDDSESDYLEKDNKGAASKSKAEPDENKFACNECDAAFRFEKQLARHMKKHTEAHRFVCALCWDRFKYPHMLQKHMEKHHPEDNPNPKTVETKQENIEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKIFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQAELRNHEWEHYRLQKEAEQKAKEEASALKIKEDQTPMEVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00655466;
90% Identity: -
80% Identity: -