Basic Information

Insect: Stratiomys singularior
Gene Symbol: ci
Assembly: GCA_954870665.1
Location: OX940882.1:8709998-8724708[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.018 3 9.6 0.6 3 23 366 389 364 389 0.94

2 5 0.1 17 7.3 0.4 1 23 397 424 397 424 0.84

3 5 0.017 2.8 9.7 5.0 1 23 430 454 430 454 0.97

4 5 0.00028 0.047 15.3 0.4 1 23 460 485 460 485 0.97

5 5 6.6e-06 0.0011 20.4 0.3 1 23 491 516 491 516 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.018	3	9.6	0.6	3	23	366	389	364	389	0.94
2	5	0.1	17	7.3	0.4	1	23	397	424	397	424	0.84
3	5	0.017	2.8	9.7	5.0	1	23	430	454	430	454	0.97
4	5	0.00028	0.047	15.3	0.4	1	23	460	485	460	485	0.97
5	5	6.6e-06	0.0011	20.4	0.3	1	23	491	516	491	516	0.97

Sequence Information

Coding Sequence: ATGGTTCTTCTCACTCTATTGTGCATTATAACGTACAACTATGTTATCGCCAATACACAATGGACGTTACCATCGAGTAGTCCTAGTCATATGATCCCAACAAGCCCTCGTTTAAGCCTGACGAACAGTTCCAGCTATTCTGAATTTCTAGCATCAAGACGAGCAGCAGCTGTTGCTGCGGCAGCTACAGTACTACCACCACCGCCTCCACCTCCACCACCTTCTTCAGCTGGTAGTCAACCACCTGGCGTACCACCTCCACATCAACCACATGATTTTCATCCAGCTTACAGGATTCCCGGCTACATGGAGCATTTATATTCATTACAACATGCCAGCCCGACCGCGTCGTTGCATGCACAACAAACCTTTCTTGGGCTCGGATTGAACTCCGACTACTTAGGAGGACGCGGTCCATTGGGCGATATTCATCCGCCAAGTTCACTGGCCAGTACAGATTTTCCATTCAGTATAGACGGTTCGCGATTGAATAGTCCACGTTCTGGAAGTATACGTGCCAGTGTTAGTCGTAAACGTGCCTTATCTTCCTCTCCATATTCTGATTCATTCGATATCAATTCAATGATACGGTTTTCACCAAATTCCCTGGCTACAATAGTGAATGGCTCCCGAAATAGCAGTGCTAGCGGCTCATACGGTCATTTGTCGGCAGGAGCAATGAGTCCGGCATTGGGAATGCATTCAGCTGGTGGTATGGCGCCGCATATTCAACAACTGCAGGCCCATCTTTTACGAGCAGGAGCTGGTCTTCTTCATCCGTTACCGTCACATCATAATCCACCGACAGCCAGTATGTTTTCTTTGGGTCACCATCCACTTCAGACGTCGAATCCTCTGACGAAACCACCGCACCTTGACGAGTCGAATTCCCAACGTCAAAAACCTGAACTACCTTCGTCAACTAATCAAGTAGCTCGAGTCGAAGCTGATAGTGCATCTAACACTCTTCCACGACGCAGCAGAACCAGTAAACGAGAATCAAATGGAACCAATGGAATCAACTTGAATGGGAATCAAACAGCTGATGGTGATACCGAAATAAGGGATGAACCAGGCGATTTCGTTGAGACGAACTGTCATTGGCGCGACTGCCGAATTGAGTTCATGACGCAGGGTGAGCTTGTTAAGCACATCAACAATGATCATATCCATGCAAATAAGAAATCCTTCGTATGCCGATGGAGAGATTGCTCGCGCGAGCAAAAACCGTTCAAGGCTCAGTATATGCTTGTTGTTCACATGCGTAGGCATACCGGAGAAAAGCCACACAAATGCACGTTTGAAGGATGTTGCAAGGCTTATTCGCGACTGGAAAATCTAAAAACGCATCTAAGATCTCATACTGGAGAAAAACCTTATACTTGTGAATATCCTGGTTGCAGTAAAGCATTCAGCAACGCATCGGATCGAGCGAAGCATCAGAATCGAACGCATAGTAATGAGAAACCATACGTTTGCAAAGCACCCGGTTGTACAAAGCGCTACACGGATCCAAGTTCCTTACGGAAACATGTGAAAACAGTCCACGGAGCTGAATTCTATGCAAACAAGAAACATAAAGGAACATCACATGATCCAGGTGGAGGCGGTGGAGGAAGCGGAGCCGATGACAATCATCATGGCACCACTGGTATTGATTCCAGTCCACGTAGTGAAGATCTACACTCTGGGAAAACAGCAAGCCTGTCGAGTCCTAGCATTAAATCTGAATCGGAAGCCAATTCGCCGGGTCAACCGCCGATCAATAGTCCAATGGGCGTTTCACAACTTATCAATGGTGTTCATGAGGATTATGATTGTGTGCCATCATCTAATACAAGCGTTCCACCAATCGGTGAAAGTGTTTCAGCAATTGATGATCCAGCATGGCCCTATGAAGATGAAGATCTAGAGGTTGCTGATTTACCTATAGTTCTACGCGCAATGGTAGGCATTGGATCCGGTCCAGGGAACGGTAACAGTGGTTCGGGAGGAGCGGCTTGCACTATGGCTTCCAACGGTATTAATAATCCGCGAAATCGATTCAAAAGTCGCTTGCAAGCCAAATCAGTGAGTGCATTAACTAACATCCCTGAAATGAACCGATGCAATATAGGTATCGGCGAGCTCAATCGTAGAATAACCGATTTGAAGATGGAACCTGGTACAATATTGCCGATGCAGCCACCCTTGAGTCACTCACCCGGCACAGCCCAACTAACTGACCTCCAGTGTAGATTGCAGCCGCAGACTCCATCCAACGGCCAGATGCCCGGACAAGGAATGGCCGGAGTCATTCAGCGAAGAGATAGTAACAATTCCAACGCTAGCACGTATTACTGCAGCATGCGCTCAGCAGACATGAGTCGAAGGAGCAGTCAAGCGTCCCAGCTTTCCTCAATATCAACCATGCGCCCCAACAGTTACAACGCATCAAACTCTTCCTTCTACGATCCGATCTCGCCTGGATGTTCGAGACGATCAAGTCAAATGTCCATGACAACGACGGGCGGTCAAAGTCTTCCACCACCACCATCATCACATCTGATCTCATCACATCTGCAACGGCTGCAGGGTACTATGACTTGCAACCCTGCTGTAGCTTCCATGAAATCTTGTGGGCGGTTCTCGATCCCCAATGTACCAACACATCATTACAATACAGTGCATTTACAGAATCAAATGGATCGAAGACAGTCTGAACCAGTCAATCAAAGCTATGATAGGATGCTTATATCTCCAGTGCCAGCGCTCAAGTCCTTGAGCCCAAAGCCAAAAACCGACGTAACAGCAAATACTACTCCCACATCTGTAGCACCAGGTGCACCTATCACCACTCCAGTGCACCATCCTAATGAAGAAGTTGTTTTGGATGAAGTAGAAGAGGGTGAAATGGTTGAAAACAAACTGGTCATTCCTGACGAAATGCTCCAATATCTGAACCAAGTAGCTGATTTCCAACAACCTTCACCTTCAACGGGAGCAAATATACAGTCCCAACAGCAAGGAGCGTCGGAATGCCATCCTGGATCAACTCAACAGCAATCACTTCAACAGCAACAAACTGACACACAAAATGAGCTCTATGGATGGAGTTCCGAACAACACGCCCAACAGCAGGTCAACCTGAATGTTCCGAGAGGCCCTCCAAACGGTCCTATGATATACAATCACAATGCTGAGGCAGTTGGATCTAACAATCAATTCGAAGTTCCTTATACAGGTGCCATCCCCAAACGCCGCCAGCACAATCCCCAGCAACCAGATAATAATCTGCCTAATACAAACAATAACGGACCCAGACCACAACATTGTTATAATGCAAGCATGGCAGGGTATCCTGGTTACAATGAGTTCAACAATATGATGCAAGCAAATCAACACTCCACTAACAATCATTCTGCGACCCATCATCAACCGAACCAgttcaacaacaataatttcgttcaaCAATACAACCCTTTGATGACCACATATCGTGCCATAGCGTGCATCCATTTAGCTGGTTACTACCACCGCACCGATAGCAGTGCTGGGAACTGCTGTTCCAATATTACTAATGGAACACCTAACAACGTTCACTGCTGTGAATCCTCAATGCTAGAGAACAAACAGCGAAAATACTTCTTCAGCAATCAGCAACAGCCAATGGTAAACAATGAAATGGTCCCTCCAACGCCAGAAATTCAGTGTGGTGATATAAGCCAATCCCAAATGTCGCCAGCATCCATTCCACCACCTTTGAGTTCAGTTCCAACAGTGGCGCCTGAAACTATGACCACACCACCAGCCCAACCATCGGTGGATACTAATGCCATGCAGCAAATGTACTCAGGAATGCCAGCAAACCAGATGGTTCAGCAAGCGCATTTGCCCCAGCCCCAGCCACAACTGCAACCCAACCAACCCCAAACTAATTTGACTGGGCAAATGGTTGAATCCATGGACACATCGCAAACCGGACTCACCGGACAAACGTACAATCACACCGGTATGCGCCAGGACACTTATCAACGTACGCTAGAATATgttcaaaactgtcaaaattggGTGGAAAACACCAATGACACAGTCACCAGCTCAACTCATCCTAGCTCCAACATGATTATCAACGATATGACAACATCTCTGAATTCTCTTCTAGAGGAGAATCGTTTCCTTCAGATGATCCAATGA
Protein Sequence: MVLLTLLCIITYNYVIANTQWTLPSSSPSHMIPTSPRLSLTNSSSYSEFLASRRAAAVAAAATVLPPPPPPPPPSSAGSQPPGVPPPHQPHDFHPAYRIPGYMEHLYSLQHASPTASLHAQQTFLGLGLNSDYLGGRGPLGDIHPPSSLASTDFPFSIDGSRLNSPRSGSIRASVSRKRALSSSPYSDSFDINSMIRFSPNSLATIVNGSRNSSASGSYGHLSAGAMSPALGMHSAGGMAPHIQQLQAHLLRAGAGLLHPLPSHHNPPTASMFSLGHHPLQTSNPLTKPPHLDESNSQRQKPELPSSTNQVARVEADSASNTLPRRSRTSKRESNGTNGINLNGNQTADGDTEIRDEPGDFVETNCHWRDCRIEFMTQGELVKHINNDHIHANKKSFVCRWRDCSREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGTSHDPGGGGGGSGADDNHHGTTGIDSSPRSEDLHSGKTASLSSPSIKSESEANSPGQPPINSPMGVSQLINGVHEDYDCVPSSNTSVPPIGESVSAIDDPAWPYEDEDLEVADLPIVLRAMVGIGSGPGNGNSGSGGAACTMASNGINNPRNRFKSRLQAKSVSALTNIPEMNRCNIGIGELNRRITDLKMEPGTILPMQPPLSHSPGTAQLTDLQCRLQPQTPSNGQMPGQGMAGVIQRRDSNNSNASTYYCSMRSADMSRRSSQASQLSSISTMRPNSYNASNSSFYDPISPGCSRRSSQMSMTTTGGQSLPPPPSSHLISSHLQRLQGTMTCNPAVASMKSCGRFSIPNVPTHHYNTVHLQNQMDRRQSEPVNQSYDRMLISPVPALKSLSPKPKTDVTANTTPTSVAPGAPITTPVHHPNEEVVLDEVEEGEMVENKLVIPDEMLQYLNQVADFQQPSPSTGANIQSQQQGASECHPGSTQQQSLQQQQTDTQNELYGWSSEQHAQQQVNLNVPRGPPNGPMIYNHNAEAVGSNNQFEVPYTGAIPKRRQHNPQQPDNNLPNTNNNGPRPQHCYNASMAGYPGYNEFNNMMQANQHSTNNHSATHHQPNQFNNNNFVQQYNPLMTTYRAIACIHLAGYYHRTDSSAGNCCSNITNGTPNNVHCCESSMLENKQRKYFFSNQQQPMVNNEMVPPTPEIQCGDISQSQMSPASIPPPLSSVPTVAPETMTTPPAQPSVDTNAMQQMYSGMPANQMVQQAHLPQPQPQLQPNQPQTNLTGQMVESMDTSQTGLTGQTYNHTGMRQDTYQRTLEYVQNCQNWVENTNDTVTSSTHPSSNMIINDMTTSLNSLLEENRFLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01089577;
90% Identity: -
80% Identity: -