Ssin018628.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- lola
- Assembly
- GCA_954870665.1
- Location
- OX940878.1:147480780-147524313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.51 85 5.1 0.7 1 20 685 704 685 706 0.95 2 8 0.021 3.4 9.4 4.7 1 23 714 737 714 737 0.98 3 8 0.00011 0.018 16.6 0.8 1 20 929 948 929 950 0.95 4 8 0.3 50 5.8 0.1 3 21 984 1003 982 1004 0.92 5 8 2.6e-06 0.00044 21.7 7.3 1 23 1012 1034 1012 1034 0.98 6 8 0.00078 0.13 13.9 0.6 1 20 1069 1088 1069 1090 0.95 7 8 0.0029 0.47 12.1 1.8 1 21 1443 1463 1443 1464 0.93 8 8 0.00045 0.074 14.7 3.0 1 23 1473 1495 1473 1496 0.96
Sequence Information
- Coding Sequence
- ATGCCACTTGTAACACAATTGCGCGAAGGTGTACATCCTTTGATTTTCCCTACGGACTTATCGGTAAGCGCGCTTGAAAAGAACGCATCTACCTCATTATCGACAGCAGCAGGATCATCATTGTCGATAAGTGGTCGTAAATCACCTCCAGCCTCATCATCCTATTCATCTCCGAACGGATCGAATGTCGCTGCAGGCAGCGGCAGTGCGGGTGCTAGGACCACAAGCGGAATCGGCGGTGGTGGAGGTTTAGGGGGTTGTGGAAGCGGAAGTTCTTCTGCATTAAGATCAAGTACATTAGGCACTAGCAGCGGTGATTCTCAAGATGGGACACCGAGTTCTTCGTTAAGTAAAAACGTCCGTGAAATAGCCAGCAATTTGTGCGGATTAGGTTTATTAGGTAGCGTAGGCGGTGGGTTGGGAGTGCTAGGTACAACAGCTCCTGCAACCAATAACCCAACACAATATGCAAGAATACGCGTTAAAAACTGGCTTATGATGACCGATCGTGCTGGAATTGAAAAGGACGTTGATACAAACCACGTAACGACAACAGCGAACGATGAAGAAAGCGTTGCATCAAATCTCCTGAATGCACTAAATAATGAGGAAAATAACGAAATTGTGGGTGGAGGGGACCTATCAGTTGGCATTGCTAACGATATTACTGATGTGAATATTAACATGGGCGATACTAATGAGGATAATGCTAGCGAGTTGGCCGGTGTGACAGTTAAAATCGAACGTAATAGCCCAAGTCCATCTACAAATACTGCTCAAGAAAGTACACAAAGCGATGGGaatattgattataattatGATATTAAAATATCCAGCCCGATTTCGTGGGCATTTGAACccattaaaacagaaaaatctcTTATATCGGACGTTACAACTACTGTGTATGCAGCGGTGAAAAAGACTCGAAAGTCCTCCATGAGCTCACCGACAATGGCCATACGCTCGAAGCCTATGCGAGTCCTGCAATCTCAAAGTGGGCAGAATAATCAATCGACGAATAACAATGGAGGCGGCGGGTCTGCTGCAGACAAAAAATATCGCATCCTCTTTCAAAATTCACGAATTCGCAAAGAAAGCCTGGAACATTCGGACGACATGATATATAATGCCGACTATGAAAAACCATGGATTTGTCGTAATTGTAATCGAGAAGGACTTCATAAAAGGCTTAAATCTCCTCCATCAAGTCCAGATGACCAACCCTGTGATTTACGTTTAATAACTCCAGCTACTATTAAGGAATTGGTTGCAGCCGCAACGTCTTCATCAGCATCATTGCCGACAGGACTGCCGCCACCATTGCCTGTCCTTGCAGCGACGGCAGGCACAAGTTCCATTTCGAGTGGGGCGCCTTCTATAGCAGCTGCGGCAGGTGTGGCGTCGAATTACGCAAATATAGTGGCTGCGGTTGCAGCAGCCGCGACATCGCCTGTATCCAAGCTATCAACTTGTCTCACATCACCGGGTATGACACAATCGCAACAATCATCTTCAGCGCTGTCTCAACTGAGTGGCGCGAACACGCCCAGTGCAGGAGCAGCAACAGCACCAGGACCACACCAGTCACCGTTACACAAGGTAAAATTTCATTCTCCGATCGGCTTAGAAAGTATGCAACAGGCAATTAGTGTTAGTTTGCCTCCGAGCAGTGGCTTGCCTTCTGCGGTTACCACAGCTTTAACTAGTCCAATATTAAGTTTACCAATAAATAGCGGTCACACTAGTGCTAGCAATTTATCGGCTACGGGTAGTTCAATAGCGGGAGCTGGAGGATGGGGTGCGTTCACCTGTCCGCGATGTGATAATTTCCCCATTTTAGGAAATTTGTTGGGTATAAATCGGAGTTCGTCTTTGAAATTGGTGAATCCGTACAAAGATGTCAATGATTATTATACAACTCTGCTGAAAGACATAACAATAACGAAAGGTTACCATCATCGGCCAAGTCAGCAGCCGCTCCCTCCTCAACAATTACAACAGCAAAGACAACAGTCTGCATTGCATCAAGATCAGCAATATCCAACTCCGTTTCGATGCCAGTTTTGCTCTCGACATTATTTGACTGCGGCTAAATTGCGGGCTCATATTGTTAAATACTGctcgaaagaaaagaaatataaatgtgTATTTTGTGATTATCGATCACGTAGAAAGGATCACATTTACAGACATTTAAATCGTATGCATTATGCCGAATATACGAAACGCTGCGCTGAAAATTTACCCTCGCTTATTGAACAACCATTCAACGAGAATGAAGATAATGTGAACGAAGACTACGATTATGAATCGAATGAGGAAGAATATGATGATGAAATAAAGgatatatcaaaaataatggaagtaTGCATTAAGGCAGAAAGGACCTACTGGACTATTCTCGAAACCGTACCTTTACAATCCACAACAGTTAATAATCAAAACGGATCAAATGGAACTGATTGTTCGAATTTAATAACGCAAGCGACCGTTGTTGTACAAATACCATCTAGTGCAGCGCATCATATTCAATATGACCCGAAAGTGAATATTAAAGGTGACCATGATCATTTAGTTTATGAAACGGTGACACCGGTTACATCTTCTACATCAAATACATCGGGCACAGTTGTTGCGGAAGTGCCGCCAGCTAATATAACGAATGTTACTACAGTACAAACTAGCAGTGAAATCGACAAAAAGGATGAGTGCAGTTTAGATGATTATAAAGATTTACTAGTGCCGAAAGatgataaaacaattttaacgCATAATACTTTATATGTTTGCGACAAATGTGGAAAGTCATACAAAATCAAGGGCTCGCTAAAACGACATAAGAGTTATGAGTGCGGTGTCCTTCCAGCTTTGGCTTGTAGATTTTATTATCTTTATGCAAACGCTGATGAGTACAAATCAATATGGGAAATGCCAGTTATAGTACCGTGCGAGAATAATTGTGGAAAATATTACACATCAGTGGGAACAATGTTGCGTCACAAACGCCTGGATTGTGGAAATATTAAACGTTTTACGTGTACAATTTGTGAGAAAACCTTCAAGAGAAAGTATCATTTGAAAAGACATTTTAATACGCATATAAGTGGTAGTCGCGTTGTTGAAAGCAGTGATGGAAATGATGAAGATGTCATGGGTTTGAAGCCTTTACTAAATTTCTATGCGGAAAAATGGCAAATACGATATCCATGCCTGACATGCGGTAAAACATATTTGCGGAAACCGCATTTAAAACGGCACATGGCCAATGAATGTATCGGAGTACAGCCGAAATTTAGTTGTGATTTGCGAACAAAACCAAAAGTTGAACCGCCGTCACCTGCAAAAAGCATTTCATCCTACATTCAACAACATCAACACAACTTTTCATCACATGCACTAGTACCTAATTTATCGGGAATGCTTCTCGAATTCTATCAAAAGAATAGTTTAAATGTaccaaagaataataaaattcaaaaatttctagCAGCATCACCACCGCCATATAGTAAACCATCAAATATTAACACAGAGACTGAGTTGAATTTATCGTCTAAACCATTTaaaacatcatcatcaacatcttCATCATCCAATGCCACCCAGTTAGCAGTAAGAAATTTGCAAGAAACCTCGAACGAGGACGATTCGTCGAcgaaaggtgaaaatctgacaATATCGTCGAATAATGCATGCGGAAGAAAGCCAAACACGTCGTTTCATCCGCGTATAAAGTATTCAAATGTCAATAATAAATCCACTAATTCAGTGGCGGTCCCGTCTACATCGGCTTCCTCTCTATGTGTAACTTCGCTTCCTTCATCTGTGATTCCTTCGACGGTCATCCAACCTCCTATTATCCCAAATGCACCGACAGCTGCAGCAATCGCGGCGGCTGCGTTTTTTCGTGGGGAGTACCGCAACTTGCACCAGCTCCAGGCGCAGGATTTTTTAAGTCATCAACAGCCCCATCCTCCAGCAACAATACCTCCCGCTCCCCCGAAAAATCCTCCATACTATATTCCGCCTTATCTAAAAAACGCGAACAGCAATGATAAGAGTTCGGAGCTCGATGAAAATTCGCAGTCGGaggatgatgaagatgatgaaaatgatgaagacGATTCGAAATATCCATCGATTGAAGACATTCACCTTATTGAAGGCTCTAAGGCTGGATATCATAATCAAAGCATGCCCGCCACAGAAAGCGACTACATGTCCGACGAATCCCATAAATACTCAATAATTGCAGCTCAAGCTCTAAGAAATTTGGAATACTCATTGAGTGATTACGGTGGAAACGGAACCGAAGAGCAGCTTTACAATTGCCGACATTGTGGTAAGAAATACAGGTGGAAGTCGACTCTACGTCGCCATGAAAATGTGGAATGTGGGGGAAAGGAACCGTCACATCAGTGCCCATATTGCCCGTATAAATCAAAGCAAAGAGGTAATTTAGGGGTCCATGTGCGCAAGCATCATGCCAATCTACCCCAATTGGCTAGCAAGCGCCGATCGAAATATTCACAACCAAGGGATTAA
- Protein Sequence
- MPLVTQLREGVHPLIFPTDLSVSALEKNASTSLSTAAGSSLSISGRKSPPASSSYSSPNGSNVAAGSGSAGARTTSGIGGGGGLGGCGSGSSSALRSSTLGTSSGDSQDGTPSSSLSKNVREIASNLCGLGLLGSVGGGLGVLGTTAPATNNPTQYARIRVKNWLMMTDRAGIEKDVDTNHVTTTANDEESVASNLLNALNNEENNEIVGGGDLSVGIANDITDVNINMGDTNEDNASELAGVTVKIERNSPSPSTNTAQESTQSDGNIDYNYDIKISSPISWAFEPIKTEKSLISDVTTTVYAAVKKTRKSSMSSPTMAIRSKPMRVLQSQSGQNNQSTNNNGGGGSAADKKYRILFQNSRIRKESLEHSDDMIYNADYEKPWICRNCNREGLHKRLKSPPSSPDDQPCDLRLITPATIKELVAAATSSSASLPTGLPPPLPVLAATAGTSSISSGAPSIAAAAGVASNYANIVAAVAAAATSPVSKLSTCLTSPGMTQSQQSSSALSQLSGANTPSAGAATAPGPHQSPLHKVKFHSPIGLESMQQAISVSLPPSSGLPSAVTTALTSPILSLPINSGHTSASNLSATGSSIAGAGGWGAFTCPRCDNFPILGNLLGINRSSSLKLVNPYKDVNDYYTTLLKDITITKGYHHRPSQQPLPPQQLQQQRQQSALHQDQQYPTPFRCQFCSRHYLTAAKLRAHIVKYCSKEKKYKCVFCDYRSRRKDHIYRHLNRMHYAEYTKRCAENLPSLIEQPFNENEDNVNEDYDYESNEEEYDDEIKDISKIMEVCIKAERTYWTILETVPLQSTTVNNQNGSNGTDCSNLITQATVVVQIPSSAAHHIQYDPKVNIKGDHDHLVYETVTPVTSSTSNTSGTVVAEVPPANITNVTTVQTSSEIDKKDECSLDDYKDLLVPKDDKTILTHNTLYVCDKCGKSYKIKGSLKRHKSYECGVLPALACRFYYLYANADEYKSIWEMPVIVPCENNCGKYYTSVGTMLRHKRLDCGNIKRFTCTICEKTFKRKYHLKRHFNTHISGSRVVESSDGNDEDVMGLKPLLNFYAEKWQIRYPCLTCGKTYLRKPHLKRHMANECIGVQPKFSCDLRTKPKVEPPSPAKSISSYIQQHQHNFSSHALVPNLSGMLLEFYQKNSLNVPKNNKIQKFLAASPPPYSKPSNINTETELNLSSKPFKTSSSTSSSSNATQLAVRNLQETSNEDDSSTKGENLTISSNNACGRKPNTSFHPRIKYSNVNNKSTNSVAVPSTSASSLCVTSLPSSVIPSTVIQPPIIPNAPTAAAIAAAAFFRGEYRNLHQLQAQDFLSHQQPHPPATIPPAPPKNPPYYIPPYLKNANSNDKSSELDENSQSEDDEDDENDEDDSKYPSIEDIHLIEGSKAGYHNQSMPATESDYMSDESHKYSIIAAQALRNLEYSLSDYGGNGTEEQLYNCRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHHANLPQLASKRRSKYSQPRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -