Basic Information

Insect: Stratiomys singularior
Gene Symbol: Slc30a1
Assembly: GCA_954870665.1
Location: OX940880.1:94107624-94126591[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.3e-06 0.00055 21.4 3.7 2 23 576 598 575 598 0.97

2 7 2.5e-05 0.0042 18.6 1.4 2 23 606 628 605 628 0.96

3 7 0.0012 0.2 13.4 0.2 2 23 644 666 643 666 0.94

4 7 0.0038 0.62 11.8 0.0 1 20 669 688 669 690 0.94

5 7 0.00084 0.14 13.8 1.9 1 23 696 718 696 718 0.96

6 7 0.0079 1.3 10.8 0.3 2 23 725 747 724 747 0.90

7 7 6.1e-05 0.01 17.4 1.4 2 23 753 775 752 775 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.3e-06	0.00055	21.4	3.7	2	23	576	598	575	598	0.97
2	7	2.5e-05	0.0042	18.6	1.4	2	23	606	628	605	628	0.96
3	7	0.0012	0.2	13.4	0.2	2	23	644	666	643	666	0.94
4	7	0.0038	0.62	11.8	0.0	1	20	669	688	669	690	0.94
5	7	0.00084	0.14	13.8	1.9	1	23	696	718	696	718	0.96
6	7	0.0079	1.3	10.8	0.3	2	23	725	747	724	747	0.90
7	7	6.1e-05	0.01	17.4	1.4	2	23	753	775	752	775	0.95

Sequence Information

Coding Sequence: ATGTGTGGGTTACTACACTATCGAATCCTCGATTATGTGGAAACAGCCTTCCGCAAAGATTGGCAAAACAAGCCTAGCATGGAGCACAGCAAACGTCTGCGGCAGCTTCATCAACAAAAGGAAAAGGAAGTGCCGAAAGAAGAAACACAATTTGTTGAAGTATGTCTTGATAGTAAGGCAACTGTTTATCCAACAACAGATTCAACTGAATCGAAACTACATAACACCTTCGGATGGACACGAATAGATATCCTTACTATGCTCATCGTTTGTATCTTTCTCGCATCATTATCCTTTTCGTTACTTGTCGAAGCGCTACAAACTCTCATTCATATCGATCATCAAGATGCTATGCATTTGCCCGTTCCTGTGTTCATACTAGGAGCGATGGGCCTGGTACTTAATGGACTGTGCTACCTATTAATTGGCGGTTATACAATGCATCAAGGAAGTTTCTTTCACGTTACATCTAGCGGAGATGTTATCCTAGAAAATATAACGACAGGAGATGATCTCAAAGCTGCATCACGTCGCCTGTCTAGAACAAAGCGAGAAGTGAATGGAAACGTAATAGACAACTCGGGGTCACCATATTTTCAGCCAGGACAACGACAAGGACCTGGCGAAATGTTTCGCGATGTTTGCAGTACACTATTTGTGATGATTTGTGCactgattatttattttgcGGATAACGAACATATTGCAAAATTCATTGATCCGATTATATCTATAGTATCATGTGTCCTGCTCCTGTTCTTGAGTTATCCATACATGAAAGAATCGTGTTTGATACTACTCCAAACAATACCAGGATCAATCGACATTGAAGTGTTTAAAGCAACacttctacaaaaatttgacgaaattgTAAGTGTGCACGACTTGCATATCTGGCAGCTAACATCTAGCAAATACGTGTCCACCGTTCACATTATTTTTCGCGATCCTCGGATCTATGCAATTATCATAGAAGACGTTAAGGATTTCTTCCACGAACAAGGAATAACAAATGTTACCATCCAACCAGAGTTTAAGGCTCCTGACATAACACCAGCAGTTCGTGATTGCTATTTACAATGCATTGATGTAGCTTGTGCGGAAAAACATTGTTGTGTTCGATCGCCGAAACCGACTGGTATAGTGGTTATAAAGGATGATCTGATAAATGACACTAAACACAATCCACAACTGAATGGGTGTAACgcgatcaaatcaaaatcaacctTAGATATTAAGTCAGcacaaatatttgaagaattgtCAGCGAAAAATGCTTTGCGCAAAACTATTACTTTTGACGAAGGGAAACCGGATCAAATATGCTGTGATTGCTACACTGAAATCGAACgtatttattcgtttattcttcGATGCGAGAAAACGGAGGCCGCTCTAAAACAACTAAAGTCGGCGCAAGGACATCTTAACAAATTGAAGGAAATAGAGATCTATGCAGAAGGTTCAGACACCTCGGACGAGGTAATTGAAATTCCAGATGACGACGAAAATGGATGGGAAGAATGTGACTCGGCCCCCTTGCATCCATCATATGACGAAGGACCTTCTACGAAAAGCTCCGAACAAATCATTGTCACGCCCGATGTTATTTGTatggaagaagaaatgaaaattaatttagaatCGGCGCAAGTCGCGCCAGCCGATGTGAAGCCAACAGTAAAACGTAAACGCTCAACGACCCAGGGAAAGTCGCAATCCAAATCGTGTGATATTTGTTTGAGAGTTTTTAAACATAAGAAGAATTTGAAACGACATATGCAGACTGTACACAGCGCTGTCGATCAATCGATTCGATGTAAAATCTGTTACCGCACGTACAGAAACAAGGACAGTCTACGATCCCACACGCTGACTGCACATCCCGATGGAAAATTGGTTGTACAACAAGAATCTACCGACAGTATCCGATGTTCAAAATGTCCCAAACAATTCGAGGATTACGCTTCATATCGCATCCATTTGGACTCTGCGCACAAGGAGTATATTTGTGAACATTGCTCAAAATCGTTCATTTGGCCTAGCGAACTGCTTGATCATATTGAAGCTACTGAAAAGGGGACATTTCAATGTGAATTGTGCGCAAAACAATTCGAAAGGAAATCGTGTTACAACGCTCATTTAGAAGGTCATAACAAAGGGGCGCAAGTAAAGTGTAAGGCTTGTTTCAAAACGTTCACGAATCGAGTGGCTTTGGATAATCATGTCGAGGACGTACATGGAGCTGAACCTCTTCGATGTAAGATCTGTTCGAAACAATTTCGTACAAAATACTCGTTGGGATATCACATCCGTGCAACGCATCCCGATTCTACAGAATCTGCAGGCGTGCAAATGTGA
Protein Sequence: MCGLLHYRILDYVETAFRKDWQNKPSMEHSKRLRQLHQQKEKEVPKEETQFVEVCLDSKATVYPTTDSTESKLHNTFGWTRIDILTMLIVCIFLASLSFSLLVEALQTLIHIDHQDAMHLPVPVFILGAMGLVLNGLCYLLIGGYTMHQGSFFHVTSSGDVILENITTGDDLKAASRRLSRTKREVNGNVIDNSGSPYFQPGQRQGPGEMFRDVCSTLFVMICALIIYFADNEHIAKFIDPIISIVSCVLLLFLSYPYMKESCLILLQTIPGSIDIEVFKATLLQKFDEIVSVHDLHIWQLTSSKYVSTVHIIFRDPRIYAIIIEDVKDFFHEQGITNVTIQPEFKAPDITPAVRDCYLQCIDVACAEKHCCVRSPKPTGIVVIKDDLINDTKHNPQLNGCNAIKSKSTLDIKSAQIFEELSAKNALRKTITFDEGKPDQICCDCYTEIERIYSFILRCEKTEAALKQLKSAQGHLNKLKEIEIYAEGSDTSDEVIEIPDDDENGWEECDSAPLHPSYDEGPSTKSSEQIIVTPDVICMEEEMKINLESAQVAPADVKPTVKRKRSTTQGKSQSKSCDICLRVFKHKKNLKRHMQTVHSAVDQSIRCKICYRTYRNKDSLRSHTLTAHPDGKLVVQQESTDSIRCSKCPKQFEDYASYRIHLDSAHKEYICEHCSKSFIWPSELLDHIEATEKGTFQCELCAKQFERKSCYNAHLEGHNKGAQVKCKACFKTFTNRVALDNHVEDVHGAEPLRCKICSKQFRTKYSLGYHIRATHPDSTESAGVQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -