Ssin032910.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- L
- Assembly
- GCA_954870665.1
- Location
- OX940881.1:13174302-13196070[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.1e-06 0.00085 20.8 1.7 1 23 186 208 186 208 0.98 2 19 0.41 68 5.4 5.7 1 23 214 236 214 236 0.98 3 19 2.2e-07 3.7e-05 25.1 3.1 1 23 242 264 242 264 0.99 4 19 1.9e-05 0.0031 19.0 0.2 1 23 270 292 270 292 0.98 5 19 3.5 5.8e+02 2.4 0.3 3 23 351 373 349 373 0.84 6 19 0.0017 0.28 12.9 0.6 2 23 397 419 396 419 0.96 7 19 0.012 2 10.2 0.2 1 23 518 540 518 540 0.98 8 19 0.00018 0.029 16.0 0.1 2 23 549 570 548 570 0.96 9 19 0.002 0.33 12.7 2.3 1 23 578 603 578 603 0.89 10 19 0.65 1.1e+02 4.7 0.1 1 19 608 626 608 628 0.92 11 19 0.23 38 6.2 0.9 1 23 638 661 638 661 0.97 12 19 0.0021 0.35 12.6 2.1 1 23 694 716 694 717 0.96 13 19 1.9 3.1e+02 3.3 0.9 1 23 873 897 873 897 0.89 14 19 0.00038 0.063 14.9 4.7 2 23 906 928 905 928 0.96 15 19 0.013 2.2 10.0 0.1 1 23 934 956 934 956 0.96 16 19 0.19 31 6.4 0.8 2 23 964 985 963 985 0.96 17 19 2.7 4.4e+02 2.8 0.5 2 23 1074 1095 1074 1095 0.93 18 19 0.0025 0.42 12.3 0.0 1 23 1105 1127 1105 1127 0.98 19 19 0.13 21 6.9 0.3 1 23 1134 1156 1134 1156 0.96
Sequence Information
- Coding Sequence
- AtggcattgaaaatgttgtacCGTGGACCAAGTTCCCGATTAGAAACGTTAATCGAGAAAATTCAACAGAATAGCAAGGACGCTGGCAATGATTTATACTCAACGCACACATCATCAAGTTATTCGCCGTCGACATCAGATGGAGCTTTAACACCGAATTCCATTATTCAtcaccatcaacatcaacacctAAGTAAACATGCTCAAGACAACCACGATGTTAATCGTCTTAGGACAAATCATGAACAGCGTCGTCGACGTCGCTTCCATGTTGCCTCTAGCACAAATGGAACTTGCGATGGACGCGAGGATAATGCACACGGCGAAGAGGATGCCGATGCTGATTCCCACGGCGGCGACGAGGACGACGAAGAAGACTCACATCAAGCGGAGGGTGCAGAAATcgacgacaatgacgatgatgatgacacCAATGAACCCCACTCAGAGTTGGGTGGCGAAAGTAACGGGAAAAAGCTGCGAAAAATCGAAAGGGATGCGGTGAAATCGGAAAAGCCGACAGGCGAAGGAATTAAAGGCAGCGCGGATGGTTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCACGTCTTGGATACTTGAAGAAGCATGAACAGAGTCACGCTGAACATCTACCCTTCAAATGTGAATATTGTGCACGTCTGTTCAAACATAAGCGTTCACGTGATAGACACACAAAACTTCATACAGGTGATCGCCGTTATCGATGTCCACATTGTGAAGCAGCTTTTTCACGCAGTgatcatttgaaaatacatatgAAAACACATGATACGCAAAAACCATTTCAATGTACCGTTTGCAATAGAGGATATAACACTGCAGCAGCTTTAACATCACACATGCAAAATCATAAGAAACAAGCGGCCCTTTTAGGAACTGGCCAGGCCCTGAACTACAGCCCGCGTTCAACAGGATCAGGATCGAGCTCGGGAAGCTTTCATAAACGTCGATATGCATTGACTGATTGCGCGCCATCGATTCGTGCCGATTATCGTAAACATAGTCGACTGGGATCATTTATCGCCTGCGTCTATTGTACGAAATCGGACTTTGCAAGTATCGAACAGCTGAACGCGCACATACATTCCATGCATGAACAGAACGCTACTAAAAAGGATGGCATAACCACCAACTGTCCAACTACCGCATCAGTATTTCAACTATCATGCGAATATTGCACCATGAAATTTCCCAACATTCCCAGTATGTTTCAACATATGCGCACTACACATATCGACAGACTGACCAGCCCCAATTCGTACTTTGAACATTTTAACCGATTGGCAGCCTCCGGAACATTCAGCCCACGTTTACTGACAAATGCACCACTTCGTTCGTGTCCTAATGATGCTGAAACAAGGGTCAAAATTGAACAACCAAGTCCCAATCAAGATAGACGAAGTCAAGGGGACTTGGAAAAGGATGAGGAACAAACTTCTCCCACTGACCTCAGCCAGCCCAGAAAGCGACTCACTCCTCAGCAAGCTGGAGGGGACGTTATAAATGAAAGAAGCTCCTCCGGCGCATTTATGTGTAACCAGTGCAATGCTGCTTTACCCGATTTCGACACATTCCGGGCTCATTTGAAGAGTCACATTTCGCAGGAGACAACCAGCCTAGTCTGCCCTCATTGTGGAATTACGTTGCGAGACTTGGCAGAGCTTGAACGTCACGTCATCTCTCACTTTCTTATTACGAACAGTGAATTCTGCTGTTCCAGCGCAAATTGTAAAAAGACCTTTCCCAAGCCAGACGAACTACAGAAGCATCTTTTTGACagtcatattcaaataatgtaCAAATGCTCTATCTGCACGGACATGTTTGACACAAAAGTAGCAATTCAAGTTCACTTCGCCTGCTCACACtccaatgaaaataaacttttccgCTGTTCAGCGTGTATGGAAACATTTGGCAGCGAAAAGGAATTTTCCAGTCATGTACGGACGCGCCATTCGAACAATGGCTCAGCTATTCAGTGCATCTTCTGCCGAGCTGTGTGCTCGTCAGAATTGGAAATGCATTTTCACTTGGCTGCTCATGCTCGTCAATTTCGGTGTCCTGCTTGTCCCGAAACATTTCATGTGGAGTTTCTACTTGATCGACACATGCAAACCCACCACTCGCAGAAAGACGTTATGTCAAATACTGTCACCGGTCGTTCTTCTGAAGGTGGGTCCGGCCCTAGGGCTTCAGAAGGTTTAAATATCAACACTTATCCGGCAGGATTTGCTAAACAACCAGTCGTTcccaacaataataataacattttggAATACAACCCTTTCGCGGGAAATAAAAACTTACTTCAATTTCctggaaataaattttacagTCCGTTACAAGTTGATACCAACGCAGTTGGTAGCCTTGCAAAGCATTCCGCATTGATGTACGGTCTCAGTCAACGTTATTTCGACGCCAATAAAACTCTCATGGATATTTACAACTATAATCAGGAGAACAAGAACGCCACGCCTTACTTTATGAACCCCAACAATTTTGACACAAACAGAACGACCTCCGGTCAAAAATCTAATCAGCCTAGCGAAAGTAAAGCATCAATTGATCGACCAAGTCCTGCAGGATTCAGCTGCGGTATATGTGAACGCTCCGATTTCCGTACAGAGAGTGACGTTCATTCTCATCGAAAAATTGTGCATAACCTCAAAACTGGCGTGAGCCTTAGATGCGCCTATTGTAATGGAAACTTTAAGTCTCGCAGTGAATTGGAACATCATATGAAAACATGTCACAATTCGACGGGAAAGCATAAATGCTTGATTTGTGATGAGATTTTTCCATCGCCGGCAGTCCTTGCCGAGCACAAACTACAGCATTCCAAAGTAGGACAATCTGGAAAGTGTTCGCACTGTTCAGCAGCGCTAAATGATGTTTCCATGTTCAAATCGCATTTGAATGATCATAATGCTGAAGGACAAATTCCTGTTCAATGTATTTGCTGTCGTCAAACATTACATTCGGATTTTGAAATTGGACTGCACGCAAAatttcatACAAAATCTGCAAATACAAGCGAAAATCTCTGCGCTCTCTGCCTGGAAACACTCCCGTCGACCGCCGAATCGCGTGTTTGTGAAAAGTGCTGCCGCAAACATAACCtcaattccaaattcaatagtgTACGAAACTTCGATATCAACGGTATAGCACGAAACTATGTTGAAAATCGTTGCAATCTCTGCAAAATGATTCTCCCACACGCACAACGTTTACAGGAACATTTAGTCGAGCATACATTTGTTGGGTGCGAAGAACGTGGTTATACATGCTATATTTGCTCATCAGTCTTCACCGTGCCAGCAGGACTCCTAAGTCATATGCTAGAGCATGGTTTGCATACACGACCCTACGATTGTAATTTGTGCTccgaaaaatacttttttcgagCCGAACTGGATAATCATCTCATTGAACACGAAATTTTGGGACGAAATGCATGTCCTTCGGACAATATTTGCAGTTCTGAAGTGGCCGATGGAAATGGTTTAGTTAAAAGTGAACAACAGGCAGAGCCTTTAAACGAAACGCCAACCAATGAGAAAGCGAAACAAGCTGTAATGGAAAGGATCAATGCGAAGGAAGAAGTCAAACTGGAAAAAGATGACGAGAAAACGGAGAAGTTACATTCGCCAGATGACGAGGACGAAGAATATATTGAAGTGGAGAAGATACAAGAAGTAGCGGGAAATAAAATTTAG
- Protein Sequence
- MALKMLYRGPSSRLETLIEKIQQNSKDAGNDLYSTHTSSSYSPSTSDGALTPNSIIHHHQHQHLSKHAQDNHDVNRLRTNHEQRRRRRFHVASSTNGTCDGREDNAHGEEDADADSHGGDEDDEEDSHQAEGAEIDDNDDDDDTNEPHSELGGESNGKKLRKIERDAVKSEKPTGEGIKGSADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDTQKPFQCTVCNRGYNTAAALTSHMQNHKKQAALLGTGQALNYSPRSTGSGSSSGSFHKRRYALTDCAPSIRADYRKHSRLGSFIACVYCTKSDFASIEQLNAHIHSMHEQNATKKDGITTNCPTTASVFQLSCEYCTMKFPNIPSMFQHMRTTHIDRLTSPNSYFEHFNRLAASGTFSPRLLTNAPLRSCPNDAETRVKIEQPSPNQDRRSQGDLEKDEEQTSPTDLSQPRKRLTPQQAGGDVINERSSSGAFMCNQCNAALPDFDTFRAHLKSHISQETTSLVCPHCGITLRDLAELERHVISHFLITNSEFCCSSANCKKTFPKPDELQKHLFDSHIQIMYKCSICTDMFDTKVAIQVHFACSHSNENKLFRCSACMETFGSEKEFSSHVRTRHSNNGSAIQCIFCRAVCSSELEMHFHLAAHARQFRCPACPETFHVEFLLDRHMQTHHSQKDVMSNTVTGRSSEGGSGPRASEGLNINTYPAGFAKQPVVPNNNNNILEYNPFAGNKNLLQFPGNKFYSPLQVDTNAVGSLAKHSALMYGLSQRYFDANKTLMDIYNYNQENKNATPYFMNPNNFDTNRTTSGQKSNQPSESKASIDRPSPAGFSCGICERSDFRTESDVHSHRKIVHNLKTGVSLRCAYCNGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAVLAEHKLQHSKVGQSGKCSHCSAALNDVSMFKSHLNDHNAEGQIPVQCICCRQTLHSDFEIGLHAKFHTKSANTSENLCALCLETLPSTAESRVCEKCCRKHNLNSKFNSVRNFDINGIARNYVENRCNLCKMILPHAQRLQEHLVEHTFVGCEERGYTCYICSSVFTVPAGLLSHMLEHGLHTRPYDCNLCSEKYFFRAELDNHLIEHEILGRNACPSDNICSSEVADGNGLVKSEQQAEPLNETPTNEKAKQAVMERINAKEEVKLEKDDEKTEKLHSPDDEDEEYIEVEKIQEVAGNKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01089383;
- 90% Identity
- -
- 80% Identity
- -