Ssin036484.1
Basic Information
- Insect
- Stratiomys singularior
- Gene Symbol
- -
- Assembly
- GCA_954870665.1
- Location
- OX940881.1:80830551-80832251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 24 6.8 0.3 3 23 66 87 64 87 0.94 2 12 2.3e-05 0.0039 18.7 2.0 2 22 209 229 208 229 0.95 3 12 0.04 6.6 8.5 1.4 3 23 245 265 243 265 0.95 4 12 8.2e-05 0.014 17.0 2.3 3 23 301 321 299 321 0.95 5 12 0.021 3.5 9.4 4.1 2 23 336 357 335 357 0.96 6 12 0.009 1.5 10.6 0.4 1 23 363 385 363 385 0.92 7 12 0.069 11 7.8 1.2 1 23 391 414 391 414 0.94 8 12 1.1e-05 0.0019 19.7 4.3 1 23 420 442 420 442 0.99 9 12 1.1e-05 0.0018 19.8 0.2 1 23 448 470 448 470 0.98 10 12 7e-06 0.0012 20.4 1.8 1 23 476 498 476 498 0.98 11 12 1.7e-05 0.0029 19.1 0.6 3 23 506 526 504 526 0.97 12 12 1.6e-05 0.0027 19.2 0.1 1 23 532 554 532 554 0.98
Sequence Information
- Coding Sequence
- ATGGATTCAgctgattttgaatttgttaaaaCTGATGAAGCTGTTCATGGCTCCAATGTGAACATCAAAAATGAACCATTGGACGAGATATTAGCACCTGATGTGAAACTCTTCGAAGTAGGTAGCAACAGCGACGTTGGCAAGTCCAAATGTGGCGAGATATTTACTATAAACCAGGGATATTTTATTCTAATATGTGCTTTTTGCAACGCCGAGTTCGAAAACATGCGGACATTTGGTGTTCATATGCGAAATAAGCATGAAGGCGGTTGTGGTTCTGGAGGAGCAAGTGCAACGTCGTTTGGCCCTGTAAATTCAGCAACAACAATCAAAGCACAACCACAGAAGCTGGaagttgaaatggaaaatcaagatgAAATGTTCGAAACGCTTCTTAATGCCGATGAACAAATGCCTGAGAGCAATGATGCAACTAATTTTATAAACGTCCTAACCGTTGTGGAGGACGGGGAGGTGCAACTATCTGATGTAGAAGACGGTGCAAAGCTAGATTCCGAGGATGGTGACGATGAAAGTTTTAAACTGTCTTCAGCAGCAGCGTCATCAGACTCTAGTGACAACGAGGAAAATCCCAAACGGAAAAAAGGCGACAATTCATCATTAAAGTGTGAAACATGCAACAAAAGCTACAAGAATAAAAACACTCTTCTTCGACATCAAAAGACCATGGGATGTAAACAAACCGTAACGCCGGTTGATCCGGACTTGTTTTGTGTACAATGTAATAGGCAACTTAAAACGCGAGCAACATTCATCAAGCATACGAAAGCCCATGAGAGCTCAGTGAAAAAAGAAGAGGGCGAGAATTCTGCGGTAGAGGATGAAAGTCCGGCTAAGTCCAAAACAAGCGAACCTCCCATTCAAGACCCTGCACTGTTTTGTGAGTTTTGTAATCGCTACTTCAAGACACGATCAAATCTTCGGACTCATGCGGAACGACACGACACTATTCCGATCGCGTTGCAAGGAGATCCAGACTTTCTTAAATGCAAGTATTGTGATGAGTCGTGCTCCGATTATAATTCTCGTAAGCAGCATGAAACCACTCATACCGGCGATCATCCATACATTTGtagaatatgtcaaaaaacattCGCaactatttacaaaaaaaatatacatgtGGCGTTGCATACGGGGGAGCGACCACATCAATGTCCTGAATGTCCTAACTCGTATCTAACAAAACGAGATGTTCTCCGTCACATCACTTATCGTCACATGAACGTGCGACGATTTAAATGCGATTTTTGCGATAAAAGTTGCTttcgaaaaaccgaactagctATTCATATGCGACGACATACCGGCGAGAAACCGTATGTGTGTGAGGATTGTGGCAATAGCTTTGCAGCTCTTAGCCAGTTGAAGAGTCATCAATTGCGTCAtacgcaaacaaaaaatttcaaatgtgatCAGTGTGGTCGTTTCTTTTATTCGAGCACGAGTTTAAAGGATCACCAGGCATCACATTCGGACGCCAAGCCATTTGGCTGTGATGTTTGCGGTCGACGATTTCCGCGGGCGAAAgctttgaaaaaacataaaaaattgcacTCCGACGTTAAGGCATACGTTTGCAATATTTGCGGAAAAGCATATGCACAAGACTCGGGACTGTACGCGCATAAGAAATCGCACGGCTTGTTTTCAAATCCGCAaggtaataatttttgttag
- Protein Sequence
- MDSADFEFVKTDEAVHGSNVNIKNEPLDEILAPDVKLFEVGSNSDVGKSKCGEIFTINQGYFILICAFCNAEFENMRTFGVHMRNKHEGGCGSGGASATSFGPVNSATTIKAQPQKLEVEMENQDEMFETLLNADEQMPESNDATNFINVLTVVEDGEVQLSDVEDGAKLDSEDGDDESFKLSSAAASSDSSDNEENPKRKKGDNSSLKCETCNKSYKNKNTLLRHQKTMGCKQTVTPVDPDLFCVQCNRQLKTRATFIKHTKAHESSVKKEEGENSAVEDESPAKSKTSEPPIQDPALFCEFCNRYFKTRSNLRTHAERHDTIPIALQGDPDFLKCKYCDESCSDYNSRKQHETTHTGDHPYICRICQKTFATIYKKNIHVALHTGERPHQCPECPNSYLTKRDVLRHITYRHMNVRRFKCDFCDKSCFRKTELAIHMRRHTGEKPYVCEDCGNSFAALSQLKSHQLRHTQTKNFKCDQCGRFFYSSTSLKDHQASHSDAKPFGCDVCGRRFPRAKALKKHKKLHSDVKAYVCNICGKAYAQDSGLYAHKKSHGLFSNPQGNNFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -